2VC8,2RM4


Conserved Protein Domain Family
LSM14
?
pfam12701: LSM14 (This model is not part of the current CDD release)
Scd6-like Sm domain
The Scd6-like Sm domain is found in Scd6p from S. cerevisiae, Rap55 from the newt Pleurodeles walt, and its orthologs from fungi, animals, plants and apicomplexans. The domain is also found in Dcp3p and the human EDC3/FLJ21128 protein where it is fused to the the Rossmanoid YjeF-N domain. In addition both EDC3 and Scd6p are found fused to the FDF domain.
Links
?
Statistics
?
PSSM-Id: 520398
Aligned: 74 rows
Threshold Bit Score: 55.5817
Created: 16-Feb-2025
Updated: 28-Apr-2025
Structure
?
Program:
Drawing:
Aligned Rows:
Download Cn3D
PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection: 
2VC8_A         6 DWLGSIVSINCGDSLgVYQGRVSAVDQVSQTISLTRPFHNGVKCLVPE--VTFRAGDITELKILEI 69  human
EDW39554       7 DWIGCAVSITCDEVLgVFQGLIKQIS--AEEITIVRAFRNGVPLRKQNaeVVLKCTDIRSINLIEP 70 
XP_005994153   4 DWIGSVVSINCGETLgVYQGKVSAVDRASQTISLTQPFHNGIKC--PVpeVTFSAIDIKDLKILEI 67 
XP_019216216  14 DWVGSVVSIDCGATLgVYQGEVSSVDHVSQTISLKHPYHNGVKC--PVpeVTFSAMDIKDLKFLDI 77 
NP_001018136   4 DWVGNLVSIHCGPTLgVYQGEISSVDQTSQTISLRNPFHNGVKC--TVpeVTFSAMDIKDLKILEI 67 
XP_003967574   4 DWLGSLVSINCGPTLgVYQGEVAFVDQSSQTISLRHPFHNGIKC--PVpeVTFSAMDIKELKILDI 67 
XP_003428062   4 QFLGCTVSIKCVDDLgSYQGQIVALN--GQSVTLAKAFCNGVPH--SSshVTLRAKDILNVDIVSV 65 
XP_011068866   4 QFLGCTVSVKCIDDL-AYQGKIIDLN--KNSLTLAKAFCNGIPH--TSsvVNLSVKDIQNLEIIST 64 
XP_002426103   3 QFIGKFISLHCNDPLgVFQGQIVHIDPTDQKITLEKAFQNGYPY--HSrqVILSAKDINDLEIIEA 66 
2RM4_A         9 DWIGCAVSIACDEVLgVFQGLIKQISAEE--ITIVRAFRNGVPLRKQNaeVVLKCTDIRSIDLIEP 72  fruit fly
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap