2VC8,2RM4


Conserved Protein Domain Family
LSM14

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pfam12701: LSM14 
Scd6-like Sm domain
The Scd6-like Sm domain is found in Scd6p from S. cerevisiae, Rap55 from the newt Pleurodeles walt, and its orthologs from fungi, animals, plants and apicomplexans. The domain is also found in Dcp3p and the human EDC3/FLJ21128 protein where it is fused to the the Rossmanoid YjeF-N domain. In addition both EDC3 and Scd6p are found fused to the FDF domain.
Statistics
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PSSM-Id: 403793
View PSSM: pfam12701
Aligned: 81 rows
Threshold Bit Score: 56.3763
Threshold Setting Gi: 121955723
Created: 21-May-2020
Updated: 7-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2VC8_A         6 DWLGSIVSINCGDSLgVYQGRVSAVDQVSQTISLTRPFHNGVKClvpE--VTFRAGDITELKILEI 69 
EEB13365       3 QFIGKFISLHCNDPLgVFQGQIVHIDPTDQKITLEKAFQNGYPYh--SrqVILSAKDINDLEIIEA 66  human body louse
XP_016845141   4 QFLGCTVSIKCVDDLgSYQGQIVALN--GQSVTLAKAFCNGVPHs--SshVTLRAKDILNVDIVSV 65  jewel wasp
XP_011068866   4 QFLGCTVSVKCIDDL-AYQGKIIDLN--KNSLTLAKAFCNGIPHt--SsvVNLSVKDIQNLEIIST 64  Panamanian leafcutter ant
XP_011453996   4 AFVGCIVSIDCGEVLgMYQGQVTCINNSSQELTITKAFRNGLKCp--VseITLNASDIKELKIVKN 67  Pacific oyster
XP_003967574   4 DWLGSLVSINCGPTLgVYQGEVAFVDQSSQTISLRHPFHNGIKCp--VpeVTFSAMDIKELKILDI 67  torafugu
XP_002028339   7 DWIGCAVSITCDEVLgVFQGLIKQIS--AEEITIVRAFRNGVPLrkqNaeVVLKCTDIRSINLIEP 70  Drosophila persimilis
Q16Z12         4 NWIGKSVSIQCREDIgVFQGVIKQVS--PAEIVITKAVRNGIPLkktTveVTFTCKDIERLELIAS 67  yellow fever mosquito
2RM4_A         9 DWIGCAVSIACDEVLgVFQGLIKQISAEE--ITIVRAFRNGVPLrkqNaeVVLKCTDIRSIDLIEP 72 
XP_026753084   3 NWIGYAVSVNCGEPLgCYQGTILEAD--GTTITLTKAFRNGFPYp--KaqVTLNAADIKDLKIIEA 64  greater wax moth
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