3IMK


Conserved Protein Domain Family
cpYpsA
?
pfam12694: cpYpsA 
Circularly permutated YpsA SLOG family
The structure of proteins in this family contain central beta strands with flanking alpha helices. The structure is similar to that of a molybdenum cofactor carrier protein.This family belongs in the SLOG superfamily, circularly-permuted version of YspA famiy showing fusions to NAD utilization and ADP-ribosylation domains including NUDIX, NADAR and MACRO. Members of this family are predicted to function as sensors of nucleotide, nucleotide-derived ligands, or nucleic acids, which are potentially processed/modified by associating effectors.
Links
?
Statistics
?
PSSM-Id: 492828
Aligned: 32 rows
Threshold Bit Score: 156.577
Created: 16-Feb-2025
Updated: 28-Apr-2025
Structure
?
Program:
Drawing:
Aligned Rows:
Download Cn3D
PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection: 
3IMK_A        11 IISGGQTGADRAALDFAIKHH--IPYGGWVPKGRLAEGGRVPET---YQLQEXPTSDYSKRTEKNVLDSDGTLIIS-HGI 84  Syntrophus acid...
WP_012585375 156 IHSGGQTGADRAALDWAIACR--IIHGGWCPKGRKAEDGPLAGR---YQLRETESAGYRQRTKRNVLESDATLIVN-LGE 229 Thauera aminoar...
WP_005369666 156 IVSGGQTSADRGALDFAIHHGyrYTHGGWVPRGRKAEDGIIPLK---YQLTELADGGYRQRTRRNVEDSDGTLIVN-LGE 231 Methylomicrobium
WP_011744487   5 IMSGGQTGVDRAALDAAIAAG--LAHGGWCPKGRLSEDGMVPSY---YLLDETPRSGYLQRTAWNVRDSDGTLIIA-RRG 78  Chlorobium phae...
Q4W540         2 IVSGGQTGVDRSALDAAIAAG--HAHGGWCPRGRRAEDGVIPEK---YRLVETPFSRYAVRTAWNVRDSDATLVLT-SGL 75  Chlorobaculum t...
WP_015750616   6 IISGGQTGIDRAALDWALEND--VPCGGWVPRGRWAEDGPVPTR---YPLQETEVVDPAVRTARNVRDSDGTLVLY-VGK 79  Desulfohalobium...
WP_015244168   5 VVTGGQTGAEQAAWVAARRAG--IVTAGYMPHGFLTEDGPAPRVgalYGAIEFPMDD-ARRIRANLRRADGLFW---FGD 78  Singulisphaera ...
Q7UR10       109 IISGGQTGVDRGALDAAIELH--LPHGGWCPAGRIAEDGRIPDR---YLLQEHASRHYPDRTEQNVIDTDATLILY-RER 182 Pirellula sp.
WP_012160829   1 -MSGGQTGADRAALDWAMVME--IEHGGWCPQGRRAEDGIIPTC---YHLQETPSSAYAQRTEWNIRDSDATVILSlSSL 74  Acaryochloris m...
Q2Y716         5 IVSGGQTGVDRTALDWALAHR--IPHGGWCPAGRRAEDGVIPGC---YVLQETPEQNYQERTKRNVRDSDGTLIITaTKE 79  Nitrosospira mu...

3IMK_A        85 L-KGGSALTEFFAEQYKKP-----CLHID--LDRISIEDAATLINSWTVSHHIQVLNIAGPRAGKDPEIYQATXDLLEVF 156 Syntrophus acid...
WP_012585375 230 L-DGGTLETVQIARQHKKP-----VLVLQ--LDETPIQEAAVRLRTWVEANRFCSLNVAGPRESKRPGIYAATYELLERS 301 Thauera aminoar...
WP_005369666 232 L-EGGTLATQAFAQQIAKP-----HLVVQ--LDAGVTAEATASVLAWLRTHIIKTLNVAGPRESKRPGIYHLTVELLKAv 303 Methylomicrobium
WP_011744487  79 L-SGGSRYTRECALYAARP-----VMIVQ--PEDRDVSSA---IYGWIVRHGLATLNVAGPRASSDPDIYAEARSIVEAF 147 Chlorobium phae...
Q4W540        76 V-AGGTKLTVECAQRYGRL-----CLIVD--LCGETDAGT---VAEWIWAHGIGVLNVAGPRESERPGIGENARRFVAEI 144 Chlorobaculum t...
WP_015750616  80 P-CGGTELTIHFARCDTWPggpraMCCVS--LDREQWTAAVSRVVHWMRTNCICTLNVAGPRESEAPGIEVMGRQFLDLC 156 Desulfohalobium...
WP_015244168  79 PdSTEAADTFAACRELAKP-----FLTINpgFTPPAE------VVAWLSVFETATLVVAGDRASRAPRIGPLVEAFLDRT 147 Singulisphaera ...
Q7UR10       183 I-SGGTALTKRICRRESRP-----FLAVN--LDSPKTAAKR--IRTWLEEHRPENLNVAGPRESNSPGIGEQTKTLLVHI 252 Pirellula sp.
WP_012160829  75 L-GGGTLLTQQLAQQIEKP-----WIHLHagMGIQNGAAH---LHQFVSQFSIKVLNIAGPRQSEEPTIGEFLTQVMNTA 145 Acaryochloris m...
Q2Y716        80 L-TGGSLFTQEYANKINRP-----CLHVY--PCKEWRKRA----YAFLESNPIRVLNVAGPRNSGAPGIERFVHEVLDEV 147 Nitrosospira mu...

3IMK_A       157 L 157 Syntrophus aciditrophicus SB
WP_012585375 302 L 302 Thauera aminoaromatica
WP_005369666 304 d 304 Methylomicrobium
WP_011744487 148 I 148 Chlorobium phaeobacteroides
Q4W540       145 I 145 Chlorobaculum tepidum
WP_015750616 157 L 157 Desulfohalobium retbaense
WP_015244168 148 F 148 Singulisphaera acidiphila
Q7UR10       253 L 253 Pirellula sp.
WP_012160829 146 f 146 Acaryochloris marina
Q2Y716       148 H 148 Nitrosospira multiformis ATCC 25196
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap