3K6O


Conserved Protein Domain Family
NigD_N

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pfam12667: NigD_N (492805 is an unknown moldel)
NigD-like N-terminal OB domain
This family of proteins is functionally uncharacterized. This family of proteins is found in Bacteroides species. Proteins in this family are typically between 234 and 260 amino acids in length. These proteins possess an N-terminal lipoprotein attachment site. The family includes NigD a protein found in the Nig operon that encodes a bacteriocin called nigrescin. It has been suggested that NigD may be the immunity protein for nigrescin (NigC) because it is directly downstream. This domain has an OB fold.
Statistics
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PSSM-Id: 492805
Aligned: 51 rows
Threshold Bit Score: 38.0814
Created: 21-Aug-2024
Updated: 4-Dec-2024
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3K6O_B        20 ATVEKqPQYdAP---YL--VLDNGEKLWVVQH-IV---PYRDLKAGERIFGNYSFLEAg--E-SGFAYNIRLND-YTL 84  Phocaeicola vulga...
WP_005846801  38 ATVNV-KGAhVY---DF--TGDRWGQIWPATT-DY---FWYSPIDGQRVILYFNPLYDn--YpEGYDCSVKVLSiKEI 103 Phocaeicola
WP_005680499  40 NQIs--EDSkEF---YF--TLDNGKTMFPSNS-QAw--GGEKFENGQRAFVIFNELEQp--V-NGYDYNIQVRDiTKV 104 Bacteroides
Q89YL2        39 INLIS-PDSkDF---YF--TLDDGKTMFPSNG-NGw--ISDKNKDGQRAFVIFKELEEp--V-KGYDYNIQVREiKEI 104 Bacteroides theta...
WP_022163076  37 GTIKV-VDGqEY---YF--ALDEGTKMYPGDTtNI---HNYTVVPEQRAFVYFDLLEEk--V-SGYDYNAAIYRiENI 102 Bacteroides
WP_005786065  43 GTMKI-PNAdTPrdfFI--ALDNGDNVLPADT-ADirnRKYTVAEGQRVFVGYLQMGKe--K-PGYE-NGKIFTiEDI 112 Bacteroides
CDD90262      41 GDMVV-KEGeSP---YL--QLDSKKTMLPSNT-SI---PSFFLEDGRRVIINFSLLQEn--Y-MGYDYYVAINDiDTV 105
1_pfamImport   2 GNVVS-EEGkPS---YL--LLDSKRTMLFSEN-SI---PSLYLEDGRRVIVNYTLLDEd--Y-QGYDFRIHVNDiDTV 66 
WP_006744231  36 GTVQMlDNAdQG---SLffLLDSNQALYPKNPgAV---ASLDLQDKDRVFVQFTDLEEn--H-EKYDLYANIQIvQKL 104 Bacteroides copro...
WP_022048486  53 GIIHK--NGeLT---TI--QTDRGALVCPSVW-NI---PA-EFKNKDRVLIYFNLLGEadsT-EQFDYYVRINEiHKI 117 Odoribacter laneus
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