3AQM


Conserved Protein Domain Family
PolyA_pol_RNAbd
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pfam12627: PolyA_pol_RNAbd (This model is not part of the current CDD release)
Probable RNA and SrmB- binding site of polymerase A
This region encompasses much of the RNA and SrmB binding motifs on polymerase A.
Links
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Statistics
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PSSM-Id: 520370
Aligned: 159 rows
Threshold Bit Score: 44.3943
Created: 16-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
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PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
3AQM_A       193 GMRISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCEYHLFQPLFPTItRY 255 Escherichia coli DH1
Q10S77       256 GFEFSSETSAAIRELSLSITDIDKARLMMELNYLLSYGAAASSLRLLRKYGLLDFLLPFQaAY 318 Japanese rice
XP_002511109 255 GFRFSRETAHFLKHFAHSILRLDKGRLLMEMNYMLAYGSSEASLRLLWKFGLLEILLPIQaAY 317
Q7XV96       265 GFNFPKETAYYVRTLACSVARLDKGRILMEINYMLAYGSAEASLRLLWRFGLLEHLLPFQaAy 327 Japanese rice
EEF40692     245 GLSISKDTESAIRKLSSSVKSLDKARIMMELNYMLSYGAAESTIYLLQRFNLLELFLPFHaAY 307
NP_179349    264 GLSLSKDVKTAIPEFVSSVANLDQFRLIMEMNYMLAYGAAAPSILLLMKFKLLHVLLPFQaAY 326
XP_001422131 334 GFTMTKELRAALRAYAATLASASPRRVASEIETLMQNGYSEASFKLLWHSTLMKYAFPVQhEF 396
Q00SN8       317 GYTMTKELRAGLRAYGPILAHENPRRVFVEMETLMHHGHSEQTFKLLWHSLLMQYMFPVQnDF 379 Ostreococcus tauri
XP_003064611 628 DFRPAPDLVSAIRANARLVRAEPPARMAAELLTVLSCGYAARAVRVLWECGLLEHLMREHaSY 690
Q73LY6       198 FLQLQ------IRKNAHLLEFVSPSRITEEINKIIFSGHASDIIKKLLDFKLYVYLQPGAcAF 254 Treponema denticola
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