Conserved Protein Domain Family
PolyA_pol_arg_C

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pfam12626: PolyA_pol_arg_C (This model is not part of the current CDD release)
Polymerase A arginine-rich C-terminus
The C-terminus of polymerase A in E coli is arginine-rich and is necessary for full functioning of the enzyme.
Statistics
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PSSM-Id: 520369
Aligned: 99 rows
Threshold Bit Score: 82.2378
Created: 16-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_011707279   355 SGLPWYD---AFMLAINEVLDNQVRIIAVPRRFTTDVRDIWALQQRLTRRQ------------GRHPERAMEHPKFRAAF 419 Aeromonas hyd...
Q747L5         332 QGASPLD---AVSAAVAAFLGEQAPLVAVPHRIGLAMREILALQQRLHRIP------------GKRPQAVLARASFAEAM 396 Geobacter sul...
Q39QS9         335 AGMPVPD---AVNAAMAGFLGEQAPIIAIPQRIALAVREILLIQHRLRKIP------------GKRPQGVLARSCFAEAL 399 Geobacter met...
WP_011735523   326 QNMPWQQ---SVNAAVAEFMGETCPIVMIANRVGIALRDIISQQMRLKKIP------------GRRPESLIARNDFSDII 390 Pelobacter pr...
WP_012646322   330 AGLPAHP---AVNAAVAEFMGEVAPTVQFPNRVAILIRDILTSQHRLRKIP------------GRHPETFATRHGFAEAL 394 Geotalea dalt...
WP_011937235   331 AGAPPQQ---AVNMAVAEFMGELAPTVLVPNKLGILIRDILASQHRFQKIP------------GRHAETFAGRAGFRDAL 395 Geotalea uran...
WP_011927867   313 TGMNWHS---AMQESVDLVLIAAAERVSIPLRLRGMIREIWTLQARFELTGn----------sQKKIRGLLTHPRFRAAY 379 Dichelobacter...
WP_012824003   305 wlhqrVDsdvAFALAMDEVIESTVKQVAIPRRLTDLMRVIWALQPTLEQAAqgmsmgiamtelKDQQKHLLAHAWFRAAL 384 Halothiobacil...
Q6F852         295 KGIVPAE---ARAQAGLDVLKRQATRTVIPRFAETFIREVWEMQTRLLNPK------------PQQIEALAGHARFRAGF 359 Acinetobacter...
jgi:Psesu_1049 348 QGMPVEE---AQRRAADRVTLHQVQTIALPKRFSLPMQEIWLLQSRFSTRQ------------RKRVFRLLAHPRFRAAY 412
WP_011707279   420 DFLLLR-----NRVergLGELASWWE-RYVESNPD-VRPQLQREATRRPASgergqagearsndgekrssnSRNRRRPRR 492 Aeromonas hyd...
Q747L5         397 AYLRCRcamngEDS-----PVLAWWE-RYARDSVM-PPVEPCSAGGETK----------------------KPRRRRRRR 447 Geobacter sul...
Q39QS9         400 AYLRCRcavtgEGG-----KILAWWE-RYARESVM-PPVEPATGGGEAPPK--------------------RRRRRGKRR 452 Geobacter met...
WP_011735523   391 EYCRITrgnrkDIV-----KQLDWWEtRAGQLPQTpTADEPAEETGAPQ----------------------RKRKRRRRR 443 Pelobacter pr...
WP_012646322   395 SYLRFAsaitgEDK-----KVLAWWE-KFQLEPQS----DIRPDGEPLQ----------------------KRRRRRKRR 442 Geotalea dalt...
WP_011937235   396 DYLRFVcdvsdEQG-----KIVAWWE-RFLQEPHL-AQPEERSEEPPRR----------------------HKRRRRKRG 446 Geotalea uran...
WP_011927867   380 DFLVIRqk--aGEA---LDQSIAWWT-AMQTEQQQyLEQPPVKNTK-------------------------PRKSRNARR 428 Dichelobacter...
WP_012824003   385 DFLCLRse--iGEV---SPDICQFWR-QYAPERDMdSGETVPTHLPEDFARhg-----------------dPQRRPRRRR 441 Halothiobacil...
Q6F852         360 DFLLLRek--sGDSs--TQGMGEWWE-HYQSLNAD-QKEVVISQY--------------------------NRQRAKTRR 407 Acinetobacter...
jgi:Psesu_1049 413 DFLALRlaasdSHA-----ADVEFWR-EAQQSSGDaLAASLDASAASGEDAdld---------------gaPRRRRRRRR 471
WP_011707279   493 R 493 Aeromonas hydrophila
Q747L5         448 G 448 Geobacter sulfurreducens
Q39QS9         453 K 453 Geobacter metallireducens GS-15
WP_011735523   444 R 444 Pelobacter propionicus
WP_012646322   443 K 443 Geotalea daltonii
WP_011937235   447 K 447 Geotalea uraniireducens
WP_011927867   429 K 429 Dichelobacter nodosus
WP_012824003   442 P 442 Halothiobacillus neapolitanus
Q6F852         408 K 408 Acinetobacter baylyi
jgi:Psesu_1049 472 R 472
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