8RCW


Conserved Protein Domain Family
Arabinose_bd

?
pfam12625: Arabinose_bd (This model is not part of the current CDD release)
Arabinose-binding domain of AraC transcription regulator, N-term
AraC is a bacterial transcriptional regulatory protein with a DNA-binding domain at the C-terminus, HTH_AraC, pfam00165, and this dimerization domain which harbours the arabinose-binding pocket at the N-terminus. AraC positively and negatively regulates expression of the proteins required for the uptake and catabolism of the sugar L-arabinose 1,2,3].
Statistics
?
PSSM-Id: 520368
Aligned: 73 rows
Threshold Bit Score: 105.81
Created: 16-Feb-2025
Updated: 28-Apr-2025
Structure
?
Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
8RCW_A        22 GADPLPFLRRFDIPpgiEhQEdaFMSLAGFVRMLEASAAELDCPDFGLRLaRWQGLGILGPVAVIARNAATLFGGLEAIG 101 Mycobacterium t...
WP_012235963  29 GIAPAEVCALVGVDpavLgRPdaRVTHDELCRAW--AAFSAADESFGLRAaVLVDAAPQSLVEYTFASAGDVRGAVRAFL 106 Sorangium cellu...
WP_012241554  20 GVAPAELLAAAGVDpgdLaDPdmRFPRAIEARLWSEAARLARDDSFGLRLaQRLPVGSLGALGFAVRSSATLGEAYARAA 99  Sorangium cellu...
Q1GDX2        68 GHDFENMLAQKLAIsepLsSSaqVLPVYEHSLVFGLAERVCNDTSIGYALaYQCTLRDAGLVGYAVSASETAGEALYTLS 147 Ruegeria sp. TM...
WP_011797841  22 GVDLAAWLAISELKerdLvDAtaLIPIEKLGELVTAAIARSGESGFGVLAgCRLIPGSHGIVGMAAAASANIREAMQIVE 101 Polaromonas nap...
WP_011913573  22 GLDCRTLFAELGLDyaaLqDPdaRFAQDDMTRLWHRAVAVSGDPAVGLNMaRQVRPAALNVVGYALMSSRNLKEGFARLV 101 Stutzerimonas s...
Q87US6        22 GVDSHALCRSAGIHmesLdDPgaQFPADAIARLWQLAVHASLDPALGLRVsRFVSPTAFHALGYTLVASGSLREVFERIV 101 Pseudomonas syr...
Q2SNQ4        49 GLDAYDLMQSAQLCaseLqSPlaPVRTDKINALFDAVIAATQCESIGIDAgKNISLTTFHALGYAVIASQSLWEGFSRVI 128 Hahella chejuen...
3_pfamImport   1 GLAPQSLCAAADIDlaaLqHSqaRTDVDRVSRLWELAVAQSANPTLGLDRqLAARHGNIDLVGYSLASGPHLLAGFRDLE 80 
WP_012028763  24 GLDAAALFAEVDLSiadLdDCdhRWPTEALSRLWVLAAERSGNPDIGLAKrDAPRPDHYGVAGYAMMSSPDLKTGLARLI 103 Bradyrhizobium ...
8RCW_A       102 RYLYVHspALTLTv---SStTARSn---VRFGYeVTE---PGIPY----PLQ--G---YELSMANAARmirLLG-GPqAR 162 Mycobacterium t...
WP_012235963 107 RFQRLIhdAAAHTfe-egP-Dh------VTFRFaLAP-------GhtapSa------vWDYLAATTVLrfrRAAtPPrEP 165 Sorangium cellu...
WP_012241554 100 RYLRVV--AIGPSle-iqI-Dg------DVARLrHEP-------PrsspAPS--RhavEFFLGNLVVLa-rRGAdPAfTP 159 Sorangium cellu...
Q1GDX2       148 RLSNVF------Evv-saS-As------GGLVDlRWD-------FgsqgKLD--LrhwSEFIATLLVRslkTLCtGAvAP 204 Ruegeria sp. TM...
WP_011797841 102 RLVSLRtgVIDIRt---RV-ANGA----FEVFF---EpvlGLGPA----SNP--V---TEIAMVAVKNiadDLI-HHgSA 160 Polaromonas nap...
WP_011913573 102 RYQRIIaeGADLDf--------QPcaqgYRLSLtIQG------------DRLppApqsAEGSLAGCLTfcrWLT-GDaLR 160 Stutzerimonas s...
Q87US6       102 RYRAMAedSLELDf--------RAvgerYEFRFgTPK------------SCQlpAhelLDAFAAIYVRtcrSRL-GRgYA 160 Pseudomonas syr...
Q2SNQ4       129 RYNYGIsnVTRLYl--------QTngdeVELGV-VRE------------GDApvHdaiLDAAACMMVRicrFLT-PQgTD 186 Hahella chejuen...
3_pfamImport  81 RHMAVIsdATSFTle-----rdARg---YWLSIhHIGa-tRPVPR----QR-------VEFAVLTLLVlcnWLT-RRdVR 139
WP_012028763 104 RYMCLV--SDAVTitlePG-QGGH-----WVRTdVFgg---------ecPI---PrqrYDYGVVNLLNlcrWMLdRR-LT 162 Bradyrhizobium ...
8RCW_A       163 ARVFSFR--HAQLg-TdaAYREALGCTVRFGRTWCGFEVDHRLAGRPI 207 Mycobacterium tuberculosis H37Rv
WP_012235963 166 T-VVRLV--RPPPad-gaLARSVFRAPIRYGEPRAEIEYPRALLDARM 209 Sorangium cellulosum
WP_012241554 160 R-AARFR--HTAPar-vdEHRRLFGAGLRFGEAHDELVLERAFLARPQ 203 Sorangium cellulosum
Q1GDX2       205 V-GVEFT--HTAPss-seQAVLAFGVKPTYRGRLNRLTFREQDLRQPL 248 Ruegeria sp. TM1040
WP_011797841 161 CSRVGFS--FPEPp-HsaLARDIFGCQVQYGQKWSGLSFALSAAEEDV 205 Polaromonas naphthalenivorans
WP_011913573 161 PLEVCFQ--GPQPa-DlePYRQLFQAPLRFGAPRYALLFREADVNTPL 205 Stutzerimonas stutzeri
Q87US6       161 PLSVHLQ--RPAPd-NpqPWEDLFRSPVMFSAQENLLEFGGDDFDSHL 205 Pseudomonas syringae pv. tomato
Q2SNQ4       187 LLRVSMG--RDKPa-DyeNYERYFRSPVSWGDSRYRLIFSRNYFHCRL 231 Hahella chejuensis KCTC 2396
3_pfamImport 140 PLAVEFMaeAPAPs-HeaAYRAAFGLLPRFGEDANRFLLSEADLLAPI 186
WP_012028763 163 PLATRFT--HPVPlsIa-AYNEAFQSPLEFDAPFNGFLVSDQDLACKL 207 Bradyrhizobium sp. ORS 278
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap