Conserved Protein Domain Family
NpwBP

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pfam12622: NpwBP 
mRNA biogenesis factor
The full-length Wbp11 proteins carry several copies of a PPGPPP motif throughout their length. This motif is thought to be necessary for folding of the molecule as it helps to bind the WW domain, Wbp11, pfam09429. This domain together with Wbp11 may function as components of an mRNA factory in the nucleus.
Statistics
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PSSM-Id: 403727
View PSSM: pfam12622
Aligned: 43 rows
Threshold Bit Score: 42.3206
Threshold Setting Gi: 74584875
Created: 11-May-2020
Updated: 7-Aug-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
ELU41165     190 PERSIYYDPVLNPYGMPPPeallpheieedhGIqadPEREVSDEdsmmdsvhsdldeedsddddivlpagpppsdlkHqs 269 Rhizoctonia sol...
XP_006688953 106 GSQSVYFNPELNPLGKVPDpqrlppgittpiGNhtlP-LKPTLKkty--------------------------------- 151 Yamadazyma tenu...
EEQ40963     135 GKESVYFNPELNPLGKVPDwrnldg-fseplPNakkP-VQRVAVe----------------------------------- 177 Clavispora lusi...
C5DP04        11 GSKSIFYDPEWNPKGLAPP------------GFknvAYNPATFTrkq----------------------------ssL-- 48  Zygosaccharomyc...
Q6FJL9        80 GPKSIFYDPDWNPKGEAPD------------GFrnvPYNPKTFKrlh----------------------------nqI-- 117 [Candida] glabr...
B4UN83        40 GIKSIFYDPDWNPSGKAPF------------GLkniPYNPRTFRrdt--------------------------------- 74  Kluyveromyces l...
XP_003674674  58 kEKSIFYDKDWNAEGKAPF------------DLrniPYNSKTFVrrg----------------------------ppI-- 95  Naumovozyma cas...
C5DII3        32 GERSIFYDHEWNPEGKAPS------------GYknvPYNQYTFKrks--------------------------------- 66  Lachancea therm...
P38305        73 GIRSIFYDKDWNPRGTAPS------------HYrniPYNPATFKrrt--------------------------------- 107 Saccharomyces c...
XP_003958999  83 GKKSIFYDKDWNPDGIAPK------------GYrniPHNPTTFVrkt--------------------------------- 117 Kazachstania af...
ELU41165     270 sdsdsedsDN--------DIPMP 284 Rhizoctonia solani AG-1 IA
XP_006688953 152 ------apDPiie---qlNITPP 165 Yamadazyma tenuis ATCC 10573
EEQ40963     178 -------pDPeis---llGIQPP 190 Clavispora lusitaniae ATCC 42720
C5DP04        49 --------QRhml---giNADLP 60  Zygosaccharomyces rouxii CBS 732
Q6FJL9       118 --------EEdlgs-lsgKLKYP 131 [Candida] glabrata CBS 138
B4UN83        75 ------piEPrln--glkEIPLP 89  Kluyveromyces lactis NRRL Y-1140
XP_003674674  96 --------NPmlagldttNIPEP 110 Naumovozyma castellii CBS 4309
C5DII3        67 ------kvEPklq--gfkSIPFP 81  Lachancea thermotolerans CBS 6340
P38305       108 ------evQArlg--nleNIKIP 122 Saccharomyces cerevisiae S288C
XP_003958999 118 ------rlTPqls--glsNIKLP 132 Kazachstania africana CBS 2517
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