Conserved Protein Domain Family
LdpA_C

?
pfam12617: LdpA_C (This model is not part of the current CDD release)
Iron-Sulfur binding protein C terminal
This domain family is found in bacteria and eukaryotes, and is typically between 179 and 201 amino acids in length. The family is found in association with pfam00037. LdpA (light-dependent period) plays a role in controlling the redox state in cyanobacteria to modulate its. circadian clock. LdpA is a protein with Iron-Sulfur cluster-binding motifs.
Statistics
?
PSSM-Id: 520362
Aligned: 47 rows
Threshold Bit Score: 225.899
Created: 16-Feb-2025
Updated: 28-Apr-2025
Structure
?
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Q8YUN1       172 MVLSAGIDAVEIHTKVGRLAEFKQLWQVISPWADQLKVLAISCPD-G-----KHLVEYLQSIYELIS----P-LPTTLIW 240 Nostoc sp. PCC ...
CAK29017     158 LLRQLQPDAIELHTHPGRAADFAERLQQIELSGVALQLLSVSCPe-Gp---gDAMPHHLWQLHQLLQgcrwP-----WLW 228
WP_011932350 139 LLQELQPDALEIHTAPERGAAFERTLQAVAASRVPLQRLAVSCGLeGhgvtpADLARELWTRHSALRrlgmR-----PLW 213 Synechococcus s...
Q7V544       139 LLAELHPDAVEIHTAPGRAEAFESTVAELMSAQVPLQRIGVSCGLeGhgltvEALASELWQRYVCLRrsgqR-----PLW 213 Prochlorococcus...
Q46IQ7       157 LLTTIKPDAVEIHTAPGRGKEFEKTIKEIFKGDLQLKRLSVSCGLqGhginhEQLAEELWLRHKFLRihnqK-----PLW 231 Prochlorococcus...
KAH0736349   195 LLERDDVDAIEIHTSGREPSVFNELWTGLGNSTANLKLVAVSFPDlR-----DSTISAMNAMYSIME----SsIYCVNLW 265
NP_001136908 209 LLKRDDVDAIEIHTTGKGTDMFNTLWDNLSGSINNVKLVAVSLPDiG-----ESTVDLMNTIYTIME----PhFKGYNLW 279
XP_003568881 213 LLKRSDVDAIEIHTTGKGTDMFSILWSSLGESINSVKLVAVSLPNaG-----ESTIDFMNAIHTIMQ----SyREGYNLW 283
Q75M00       205 LLKRNDVDAIEIHTTGKGTDMFNTLWSNLGESINNVKLIAVSLPDvG-----DSTVNLMNAIYTTMQ----ShLQGYNLW 275 Japanese rice
ERN03128     182 LLKRNNVDAIEIHTSAREINSFEKLWNSLADFVGHLNLVAVSLPDlG-----ESTVDAMNKMYTIMN----PfLKCYNLW 252
Q8YUN1       241 QTDGRPMSGDIGDGTTLAAVKLGQKVLAA-KLP-GYIQLAGGTNSYTVAKLKAMGLLKKAREqgagrevarretlranfp 318 Nostoc sp. PCC ...
CAK29017     229 QLDGRPMSGDIGAGTAQAAVNLLQRRRGQ--LPpGPLQLAGGTNHDSRRRLEREGLAD---------------------- 284
WP_011932350 214 QLDGRPMSGDVGAGTARAALRLWQQLRTI--APpGPLQLAGGTNDVTLNLLQTLEPS----------------------- 268 Synechococcus s...
Q7V544       214 QLDGRPMSGDIGSGTARVAIALWRKLRPL--APpGPLQLAGGTNAHTITYLSSEH------------------------- 266 Prochlorococcus...
Q46IQ7       232 QIDGRRMSGDLGAGAAKIAVKLWERLRPI--APpGPLQLAGGTNESTIKYLPGIK------------------------- 284 Prochlorococcus...
KAH0736349   266 QLDGRPMSGDIGRGATRDAIAFARKLASAgDKPkGFLQLAGGTNGHTVEGLKKENLFQTTTIheasrnek---------- 335
NP_001136908 280 QLDGRPMSGDIGRGATRETVSFAAHVASMsERPpGFYQLAGGTNSYTVDYLKKAGLFQSSNWnsgtat------------ 347
XP_003568881 284 QLDGRPMSGDIGRGATRETVSFAVDLTSMsDRPqGFYQLAGGTNLYTVDSLKNAGLFKATTLpgtttt------------ 351
Q75M00       276 QLDGRPMSGDIGRGATRETVSFAVHLSSMsNRPpGFYQLAGGTNSYTIESLKKAGLFQSTTFpgaats------------ 343 Japanese rice
ERN03128     253 QLDGRPMSGDIGRGATRDAIAFAARMSSIkDKPhGFLQLAGGTNFHTVGGLKEAGLFQTPNIqedgndvh---------- 322
Q8YUN1       319 tgryangsmgeissplppalrvrsrlwgkpprprcltsrPSASIAGVAYGSYARVMLSPIIEQLENKEVSNSsvkatvrL 398 Nostoc sp. PCC ...
CAK29017     285 ------------------------------------------AVAGIAYGGSARKLIQPLLQQAQARGQA---------L 313
WP_011932350 269 ---------------------------------------TLVRPSGVAFGGMARALLQPLLHQAEMRQTT---------L 300 Synechococcus s...
Q7V544       267 ------------------------------------------GPAGIAFGGMARRLLQPWLLEAQARHVS---------L 295 Prochlorococcus...
Q46IQ7       285 ------------------------------------------GPEGIAFGGKARKIIQPWLEEAQRKGIS---------L 313 Prochlorococcus...
KAH0736349   336 --------------------------------nsstlhsPNALIAGVAFGGYARKIVGRVLSSVQSHHG-LAr------V 376
NP_001136908 348 ---------------------------------semassHQALIGGIAYGGYARKIVGRVLRKIPEQFG-RVh------I 387
XP_003568881 352 ----------------------------------ekfgsQQALIGGIAYGGYARKIIGRILRKIPVQLG-RMr------I 390
Q75M00       344 ----------------------------------gvtdcQQAFIGGIAYGGYARKIVGRVLRKIPAQFG-HAr------I 382 Japanese rice
ERN03128     323 -------------------------------qaerfsgwPYASIGGVAYGGYARKIVGRVLNKMQSEEG-PAh------I 364
Q8YUN1       399 EEEPELLWQAVELARSLVSQ 418 Nostoc sp. PCC 7120
CAK29017     314 RACPDLWGQALVQLQSLFCr 333
WP_011932350 301 RDWPTGWEEAVTLARSLVTP 320 Synechococcus sp. CS-197
Q7V544       296 REWPEGWQAALAQAEQLVRP 315 Prochlorococcus marinus str. MIT 9313
Q46IQ7       314 REWPEGWEAALSEAKRLINP 333 Prochlorococcus marinus str. NATL2A
KAH0736349   377 EDFPEQLLQAIIESLALVGt 396
NP_001136908 388 EDHPDHLLEALQEAMSLVGP 407
XP_003568881 391 EDHPGYLLEALQEAMSLVGP 410
Q75M00       383 EDHPDYLLEALQEALSLVGP 402 Japanese rice
ERN03128     365 ERYPDYLVEALEEALSLVGP 384
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap