Conserved Protein Domain Family
iRhom1-2_N

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pfam12595: iRhom1-2_N (This model is not part of the current CDD release)
Inactive rhomboid proteins 1/2, N-terminal
This entry includes inactive rhomboid proteins (iRhom1/2), which are catalytically inactive rhomboid protease homologues that play crucial roles within the secretory pathway, including protein degradation, trafficking regulation, and inflammatory signaling. These are metazoan specific pseudoproteases which regulate ADAM17 protease, a sheddase of the epidermal growth factor (EGF) receptor ligands and TNF, acting as trafficking factors that escort ADAM17 from the ER to the later secretory pathway. They are required for the cleavage and release of a variety of membrane-associated proteins. iRhoms share a common structure comprising 7-helix transmembrane-spanning domains (TMDs) which is a conserved rhomboid fold (pfam01694), an extended N-terminal cytosolic domain and a luminal loop. These proteins have been linked to the development and progression of several autoimmune diseases including rheumatoid arthritis, lupus nephritis, as well as as hemophilic arthropathy and also in neurological disorders such a Alzheimer's and Parkinson's diseases, inflammation, cancer and skin diseases. This entry represents an N-terminal helical segment of iRhom 1/2.
Statistics
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PSSM-Id: 520351
Aligned: 9 rows
Threshold Bit Score: 291.765
Created: 16-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q6PIX5        91 VSKDSDST-QKWQRKSIRHCSQRYGKLKPQVIRELDLPSQDNVSLTSTETPPPLYVGPCQLGMQK-------IIDPLARG 162 house mouse
XP_049331539  94 VSKDGDAT-QKWQRKSLRHCSMRYGKLKPQVIREMELPSQDNISLTSTETPPPLYVPSSQHGIPK-------IVDPLARG 165
XP_003964817  94 VSKDGDST-QRWQRKSLRHCSMRYGKLKPQVIREMDLPSQDNISLTSTETPPPLYVPASQHGMQK-------IVDPLARG 165
XP_009304980  92 VSNDLDAT-QKWQRKSLRHCTQRYGKLKPQVIREMDLPSQDNLSMTSTETPPPLYVPPPHHGMQR-------IVDPLARG 163
XP_007482651  99 VSEDWDGKrQNWHRKSLHHCSMRYGKLKASCQRDLELPSQEVPSFQGTESPKACKLPK--------------IVDPLARG 164
XP_041575824  86 VSSDWEGKrQQWQRKSLQHCSMRYGKLKPA-YRDMELPSQEVPSFQATESPKPTKMPK--------------IVDPLARG 150
1_pfamImport   1 VSKDSDST-QRWRRKSLQHCSHLYGGLKPQVMRDRELHSQDNISLASTETPPPLYLPPYHHGMQRvgkrrgqIVDPLARG 79 
XP_011603031  91 VSKDSDST-QRWRRKSLQHCSHLYGGLKAQVMREMELRSQDNLSLASTETPPPLYLPPHHPsnrycg--mqrivDPLSRG 167 torafugu
XP_029706086  91 VGEDGESKqQVWHRKSLRHCSQRYGRLKAQ-YREPDTASSLDQGL---DSPGTQRLPK--------------IVDPLARG 152 torafugu
Q6PIX5       163 RAFRMADDtADGLS-----APHT-PVTPGAASLCSFSSSRSGFNRLPRRRKRESVAKMSFRAAAALVKGRSIRDGTLRRG 236 house mouse
XP_049331539 166 RAFRMVEE-VDGYS-----VPQT-PITPGAASLCSFTSSRSGLNRIPRRRKRESVAKMSFRAAAALVKGRSIRESTLRRA 238
XP_003964817 166 RAFRMVEE-VDGYS-----VPQT-PITPGATSLCSFTSSRSGLNRLPRRRKRESVAKMSFRAAAALVKGRSIRESTLRRA 238
XP_009304980 164 RAFRNVDE-VDGVN-----VPQT-PITPCAASLCSFTSSRSGFNRPPRRRKRESVAKMGFRAAAALVKGRSLRDGAVRRL 236
XP_007482651 165 RAFRHPDE-VDRHHp---pLP---PLTPGVLSLSSFTSVRSGYSHLP-RRKRMSVAQMSFHAAAAILKGRSVLEPAGQKR 236
XP_041575824 151 RPFRHPDE-TDRPHtphhvLP---PLTPGVVSLASFNSIRSGYGRLP-RRKRESVAHMSFKAAAALLRGRSVLEPLAPKR 225
1_pfamImport  80 RAFRLVEE-VDGFS-----VPQT-PITPGTASLCSLSSSRSALNWLPRRRKRESVAVMSLKAAAALMKGRPLADSTSGRP 152
XP_011603031 168 RAFRVVEE-ADGSS-----VPQT-PVTPCTASLCSYSSSRSALNRLPRRRKRESVAVMSLKAAASLMKGRTLGGSTAHRC 240 torafugu
XP_029706086 153 RAFRCPEE-MEGRSprtphLPPGgPITPGITSLSSFTSQRSGYSRFP-RRKRESVARMSLRAASNLMRGRSGLTGSTQTA 230 torafugu
Q6PIX5       237 Q---RRSFTPASFLEEDMVDFPDELDTSFFAREGVlHEEMSTYPDEVFESPS 285 house mouse
XP_049331539 239 H---RRSFTPASFIEEDVVDFPDELDTSFFARDVLmQEEMSTFHDEVFESPS 287
XP_003964817 239 Q---RRSFTPASFMEEDIVDFPDELDTSFFARDILmHEELSTYADEVFESPS 287
XP_009304980 237 P---RRSFAAASFLDEDTVDFPDELDTSFFAKDGVtHEELSTYADEVFESPS 285
XP_007482651 237 Rv-iKRSFAYPSFHDEDVVDGADTFDSSFFSKIDM--QEMYSMPDDVFESPP 285
XP_041575824 226 Rs--KRSFLYPSFMDEDMVDAADTLDSSFFSKMDM-HDETYSMPDDVFESPP 274
1_pfamImport 153 R---RRSFMPSSFLEDDTVDSTDELDTSFFTREGL-HDELYSYVDEVFETPS 200
XP_011603031 241 R---RRSFMPPSFFEEDSVDFLDDLDTSFFNReglhdelssyaddvfetase 289 torafugu
XP_029706086 231 RnfpKRSFARPSWMEEDMVDSAGTSESIFFSKVDA-HEELFSMADDVFESPP 281 torafugu
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