6OEM


Conserved Protein Domain Family
RAG1_imp_bd

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pfam12560: RAG1_imp_bd (This model is not part of the current CDD release)
RAG1 importin binding
This region of RAG1 is responsible for binding to importin alpha.
Statistics
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PSSM-Id: 520335
Aligned: 17 rows
Threshold Bit Score: 388.697
Created: 16-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
6OEM_A         12 SSAPDEIQHPQIKFSEWKFKLFRVRSFEK-APEEAQKE-KDSSEGKPYLEQSPVVP-EKPGG--QNSILTQRALKLHPKF 86   house mouse
XP_031797794   12 SSAPDEIQHPYMKFSEWKFKLFKVRSFIKpPPEEAQGPnKNLGEGQASLEETPAVIsSANIPapEKPALIQPTFSALPKS 91  
Q28463         12 RPVPDEIQYPHMKFSEWKFKLFKVRSSVKpSPGEAQGPsKNTMEGQSSLEETPVVIcNTNIPapEKPALVQPTFTANSKS 91   gray short-ta...
NP_001243830   12 NSAPDEIQHPHIKFSEWKFKLFRVRSFEK-APEEAQKEkD-SSEGKPSLEQSPAVL---DKAggQKPVLTQPAVKPHPKF 86  
P15919         12 SSAPDEIQHPQIKFSEWKFKLFRVRSFEK-APEEAQKEkD-SSEGKPYLEQSPVVP---EKPggQNSILTQRALKLHPKF 86   house mouse
XP_002199718    7 MDLPEELQHTYTKFSEWKFKLFKLRSFEKtPSDDSQHIhKDQAEEAVSSNKEIILHkDEAVPrgEKTELT-----GNRQG 81  
XP_010709561    7 MDLPEEIQHPYAKFSEWKFKLFKVRPFQKaPSDKSQCInKDQEQEVASTDQNITLHkDEEVPrgEKLILTQMDFMGNTQA 86  
5_pfamImport    2 SFMPAELQHPHSKYSQWKFKLFRVKSMEK-APLPSETQtEIGASLGISPPTAPNIEaDHGGG------------------ 62  
2_pfamImport    2 SVVPDELHPPHSEYSQWKFKLFRVKSMER-APLPSKTQsEIGATLVISAPAVSDEEtGLGEA--PASVMKLCFGGKSKEN 78  
XP_040019505   13 SSMPAELCHPHSKYSQWKFKLFRLKSMEK-VPLPTETRpEEGALSGIPPPAALNIEvDNGTG--AESVMKLCLGGKSKEN 89  
6OEM_A         87 SK--KFHADGKSSDKAVHQARLRHFCRICGNRFKSdGHSRRYPVHGPVDAKTQSLFRKKEKRVTSWPDLIARIFRIDVKA 164  house mouse
XP_031797794   92 LE--KPADVGKTREKAIHLASLRQLCRICGVSFRAdGQNRRYPVHGPVDNKTQSLLRKKEKKVTSWPDLIAKVFKIDVKG 169 
Q28463         92 LE--KPADIGKAGEKAIHQASLRQLCRICGASFRAdGQNRRYPVHGPVDSKTQGILRKKEKKVTSWPDLIAKVFKIDVKG 169  gray short-ta...
NP_001243830   87 LK--KSHDDGKAREKAIHQASLRHLCRICGNSFKTdGHNRRYPVHGPVDGKTQVLLRKKEKRATSWPDLIAKVFRIDVKA 164 
P15919         87 SK--KFHADGKSSDKAVHQARLRHFCRICGNRFKSdGHSRRYPVHGPVDAKTQSLFRKKEKRVTSWPDLIARIFRIDVKA 164  house mouse
XP_002199718   82 LE--EDAHAMKTQDIRAHQNNLKQLCRICGVSFKTdCSKRTYPVHGPVDDETLYLLRKKEKTATSWPDLIAKVFKTDVRG 159 
XP_010709561   87 LE--KNVNDMKIQDNTVHQNNLKQLCRICGASFKTdCYKRTHPVHGPVDDETLCLLRKKEKKATSWPDLIAKVFKIDVRG 164 
5_pfamImport   63 ---------LATMKKKFYDLIILCLCRICGMVLRK-VKGPVHDVHGDLDDASKCVLRKMGCKFTSWPDILLKVFKVDVTE 132 
2_pfamImport   79 VEgpGRRVDMKLQEMDTHMNHLRCLCRICGMALRK-VKGPLHEVHGNLEETSKCALRKMGCKLTSWPQVLLNVFKVDVTE 157 
XP_040019505   90 VEgpGRRVDMKLQEMDTHMNHLRCLCRLCGMALRT-VKGPVHDVNGDLDEVSKGALRKMGCKFTSWPEVILKVFKVDVKE 168 
6OEM_A        165 DVDSIHPTEFCHDCWSIMHRkfssSHSQVYFPRKVTVEWHPHTPSCDICFTA-----HRGLKRKRHQPNVQ-LSKKLKTV 238  house mouse
XP_031797794  170 DVDSIHPTQFCHSCWNIMYGrfsnAPCEIHFPRKAAIEWRPHTPDCDSCQAA-----RRGLKRKGHQSNLL-LSKKLKTV 243 
Q28463        170 DNDSIHPTQFCHNCWNIMYGrfsnSPHEVYFPRNATIEWHPHTPSCDICQAA-----RWGLKRKGRQSNPS-LSKKLKAM 243  gray short-ta...
NP_001243830  165 DVDSIHPTEFCHNCWSIMHRkfssAPCEVYFPKNATMEWHPHTPSCDICHTA-----RQGLKRKSHQPNVQ-LSKKLKTA 238 
P15919        165 DVDSIHPTEFCHDCWSIMHRkfssSHSQVYFPRKVTVEWHPHTPSCDICFTA-----HRGLKRKRHQPNVQ-LSKKLKTV 238  house mouse
XP_002199718  160 DVDTIHPTRFCHNCWSIIHRkfsnTLCEVYFPRNSTMEWQPHSPNCDVCHTT-----RRGVKRKSQPPSVQ-RGKRVKTT 233 
XP_010709561  165 DVDTIHPTRFCHNCWSIIHRkfsnTPCEVYFPRNSTMEWQPHSTNCEVCHTP-----RRGVKRKSQPPNVQ-HGKRVKIT 238 
5_pfamImport  133 DAESIHPLSFCHRCWLAAIR----GGGVCSFTRTKVPEWKPHTSHCYLCSPK-----NPVL------------------- 184 
2_pfamImport  158 DAESIHPLFFCHRCCMVAIR----GGGVCSFTRTQISEWKPHSSHCHLCYPKklsfqRTGRKRRKVIPRAQsLAKRSRWD 233 
XP_040019505  169 DTESVHPLSFCHRCWVVTIR----GGGFCSFSRTRVPEWKPHSSTCNLCSPRkpsfqRTGRKRRKAIPRAQsLAKRARRD 244 
6OEM_A        239 LNHARRDRRKRT-------------QA----RVSSKEVLKKISNCSKIHLSTKLLAVDFPAHFVKS 287  house mouse
XP_031797794  244 IKQTRRAHPSKS-------------QVq--pRNGGKDRMKKITNCSKMHLSTKLLAVDYPVDFVKA 294 
Q28463        244 ADRARRARLPKS-------------QAq--pRKSSKDLMKKLTNCSKMHLSTKCLAVDYPVDFVKA 294  gray short-tailed opossum
NP_001243830  239 VDRARQARQHKR-------------RAq--aRISGKGVLKKITNCSKIHLSTKLLAVDFPAYFVKS 289 
P15919        239 LNHARRDR--RK-------------RTq--aRVSSKEVLKKISNCSKIHLSTKLLAVDFPAHFVKS 287  house mouse
XP_002199718  234 VERAQLNRGVKN-------------QQikqaQINNKNLMKEIVNCKDIHLSTKLLAIDYPVDFIKS 286 
XP_010709561  239 AERARVSRGIKN-------------QVl----INNKNVMKEITNCKNRHLSTKLLAVDYPADFIKS 287 
5_pfamImport  185 -------------------------RAwkknGIQREQWVKNITHCQNDHLNTKLIAEKLPTDFIIS 225 
2_pfamImport  234 HSDSISLGERKAlsqyge-rqgpvlRAwkkaGLQREQWVRSITHCQKEHLSTKLISEKLPVDFIIS 298 
XP_040019505  245 PGDCIVVGERKAlrpfgdnrhgpvlRAqgqlSIQREHWVKNITHCQRDHLNTKLICEKLPVDFLYS 310 
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