Conserved Protein Domain Family
Sox_N

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pfam12444: Sox_N (This model is not part of the current CDD release)
Sox developmental protein N terminal
This domain family is found in eukaryotes, and is typically between 69 and 88 amino acids in length. The family is found in association with pfam00505. There are two conserved sequence motifs: YDW and PVR. This family contains Sox8, Sox9 and Sox10 proteins which have structural similarity. Sox proteins are involved in developmental processes.
Statistics
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PSSM-Id: 520272
Aligned: 18 rows
Threshold Bit Score: 83.6296
Created: 16-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
XP_003224717  23 PSPALSDEeASSSGSPC-----------PSGSGSD-AEGSgssshggrpprlgdggafAKSGDAEMKKEaggvggggggg 90 
NP_001158342  22 TNSSMSQD-ESDSDAPSs----------PTGSDGH-GSLL------------------AGLSKKLDSED----------- 60 
XP_005809346  22 TNSSMSQD-ESDSDAPSs----------PTGSDGH-GSLL------------------SGLGKKLDSED----------- 60 
XP_036016319  18 TASSMSHVeDSDSDAPPs----------PAGSEGL-Gr--------------------AGGGGRGDTAEa---------- 56 
NP_990062     21 TTSSMSHV-DSDSDSPLs----------PAGSEGL-GCAPapapr---------ppgaAPLGAKVDAAEv---------- 69 
XP_001373727  21 TTSSMSHVeDSDSDTPLs----------PAGSEGL-GCSSgtgpr--------sagggAALGSKVDPGEv---------- 71 
XP_006002009  12 MSPTGSEEhHCLSPGPSa----------GVECESH-RPNSttg-------------eeGKVKQE-KDSEe---------- 56 
Q9W757        12 MSPVGSEDhHCLSPGPSm----------ASDNSSH-LASSgng-------------emGKVKKEQQDSEa---------- 57  chicken
Q70W02       115 SAVAVARAaATLLESKSseeenydeslmNTGSSAR-SASPgtn------------ddlSDRDSNPEKDDm---------- 171 vase tunicate
XP_002122233 130 savavaraaaTLLESKSseeenydeslmNTGSSARsA-SPgtn------------ddlSDRDSNPEKDDm---------- 186 vase tunicate
XP_003224717  91 eEDKFPVCIREAVSQVLKGYDWTLVPMPVR 120
NP_001158342  61 -DERFPACIRDAVSQVLKGYDWSLVPMPVR 89 
XP_005809346  61 -DERFPACIRDAVSQVLKGYDWSLVPMPVR 89 
XP_036016319  57 aDERFPACIRDAVSQVLKGYDWSLVPMPVR 86 
NP_990062     70 -DERFPACIRDAVSQVLKGYDWSLVPMPVR 98 
XP_001373727  72 -DDRFPACIRDAVSQVLKGYDWSLVPMPVR 100
XP_006002009  57 eDDRFPICIREAVSQVLSGYDWTLVPMPVR 86 
Q9W757        58 dDDKFPVCIREAVSQVLSGYDWTLVPMPVR 87  chicken
Q70W02       172 sKD-----IKDAVSQVLKGYDWTLVPMPVR 196 vase tunicate
XP_002122233 187 sKD-----IKDAVSQVLKGYDWTLVPMPVR 211 vase tunicate
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