Conserved Protein Domain Family
GDE_N

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pfam12439: GDE_N (This model is not part of the current CDD release)
Glycogen debranching enzyme N terminal
This domain family is found in bacteria and archaea, and is typically between 218 and 229 amino acids in length. The family is found in association with pfam06202. Glycogen debranching enzyme catalyzes the debranching of amylopectin in glycogen. This is done by transferring three glucose subunits of glycogen from one parallel chain to another. This has the effect of enabling the glucose residues to become more accessible for glycolysis.
Statistics
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PSSM-Id: 520269
Aligned: 143 rows
Threshold Bit Score: 126.501
Created: 16-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_012412311   7 REWLLTNGLGSFASGTISDVRTRTYHGWLFTATNPPSGRTLLFSHLDASLEVsgnv-----valgTN----VWgNGQ-IE 76  Nostoc punctiforme
WP_044037546  21 fsWMIGNGIGGYSNNTIIGGGATAFHSYLVASLNPPVNRVSLFTRTQEEIMIgnni-----idltSQ----QY---VnSS 88  Clostridium bor...
WP_015395227  21 REWMIGNGIGGYSSQTIINSGFRCHNGYLIAAMNPPVERYSILYRTQEKIVTdgrt-----ydltCQ----EY---KdYT 88  Clostridium sac...
CCY78741      29 KEWLISNGIGGYANSTVIGSNSRSFSSLLNVSLNHPTDRYTLLANISERISDdtgitnlatyhsiSE----TY------- 97 
Q5E353        19 sNYLLTNGLGGYSSLTLAGSCSRNDHALFMGSLVAPNSRFCFVRHLDDRLTLangts----hplsSQakvnPY-----DT 89  Aliivibrio fisc...
WP_012200358  19 nCYLITNGLGGYSSLTTIGSNSRNDHALLMACTIAPNHRYHLITRMDEVVELdkek-----fslsSQ----EY-VNHaKN 88  Lachnoclostridi...
CDF44235      19 dCFLLTNGLGGYSSLSVIGSLARGDQALLMSAKKAPNVRRHLISNLLETFSMdgtdyvltsqrmiNQ-----------PD 87 
Q8XHY8        17 KEWMLTNGISGFCGGTAIGANCRKYQGLLVACTNSPEERYMILSNLNEEINIdgkl-----hqlsSC----KY---TdKI 84  Clostridium per...
WP_013655486  17 REWLITNGRSGFAGATMTGANSRKYHGLLIACLTSPEERYMILNKLQEQVICeges-----ypltTT----KY---QkNI 84  Cellulosilyticu...
WP_014560813  18 lKWIDANGLGGYASSTVLGLNTRRYHGLLVAALNPPVEREVIVSKIDETLIIknka-----yeisTN----QF-PGK-VH 86  Ignavibacterium...
WP_012412311  77 LTGYELLRCFDINPVPKWIWGRDNWQLSRQLVMPYGlveagdtstssvhrwrlgirneeleiaknasqcpmtavaplget 156 Nostoc punctiforme
WP_044037546  89 KNGQIYLERFTFDTIPEYTYRVDDTYIKKSIAMEYG-------------------------------------------- 124 Clostridium bor...
WP_015395227  89 KNGYEYLKSFIFDSVPQYIYQIEDINVKKTIAMEYG-------------------------------------------- 124 Clostridium sac...
CCY78741      98 -EGFRYLSHFSFGSYPEYTYQIGDMIIRKSIGMVYG-------------------------------------------- 132
Q5E353        90 VDSSLLFENFSQTYLPQYTYRIDGIEITKTIVMAQG-------------------------------------------- 125 Aliivibrio fisc...
WP_012200358  89 QLGFQYLNQFTFEYYPVWVYQVEGIEIKKTVLMSYG-------------------------------------------- 124 Lachnoclostridi...
CDF44235      88 LEGFHYLDSFSYDKIPTWTYRIGDVVISKRMVMVHG-------------------------------------------- 123
Q8XHY8        85 VDGFKNLQGFYYDGLPHFRFFVDGVVINKKIAMEYG-------------------------------------------- 120 Clostridium per...
WP_013655486  85 VKGYENQQSFSYDGLPHYRYVINGLVIDKQVALAYG-------------------------------------------- 120 Cellulosilyticu...
WP_014560813  87 PEGYKYLIEFNKNLFPEFIYQVCKVKLKKTIAAING-------------------------------------------- 122 Ignavibacterium...
WP_012412311 157 psrsvsqrrphclpnaqfCHRILIQYRYDG--NdTAILRLRLLIAERDFHHPQIASSGLQFSEL---------L------ 219 Nostoc punctiforme
WP_044037546 125 ------------------HNTVVVCYEIENgmE-DSKLKIVPLFNYRQAGELSEKSELKFDMelkdril---------kl 176 Clostridium bor...
WP_015395227 125 ------------------YNTVAICYEIENgsS-KAKIDITPLFNFKEAGTFKASEQLDFKTelqddil---------kl 176 Clostridium sac...
CCY78741     133 ------------------KNTSVICYSVKNgsN-NRKLYITPYFTCKTLGEVADPMALGLHSaeksgti----------t 183
Q5E353       126 ------------------VNRLGVEYRVFNplKhPFTLDITPKYHFCAKGEALSKEQAFIHQEGkv-------------- 173 Aliivibrio fisc...
WP_012200358 125 ------------------ENTIGIRYVIHNnmDkEVKLTITPQLQFIPKGDTLNPNQIFEINDNvi-------------- 172 Lachnoclostridi...
CDF44235     124 ------------------ENTVALQYNIHSeqKhQCRLTLTPMLRFSPKKEEFCEKQQITVNIE---------Qdnly-- 174
Q8XHY8       121 ------------------KNTAVIEYDILNgsK-ESKINIKPLFTFRNPGVCSEEENLKFSKtvdknki---------ql 172 Clostridium per...
WP_013655486 121 ------------------KNTVVIAYDICNnsK-EAVLDVSPFLTCRNPGECSKKVNLTFEKgnqennktskalkneqqf 181 Cellulosilyticu...
WP_014560813 123 ------------------CNKTVVIYEVLDs-EnEFQIHLSPFVAMRDFHSLRKADSTIRSEYT---------Fhdgmfe 174 Ignavibacterium...
WP_012412311 220 -----GQQQICLQAkklgnfgipwhlrwtKGKYQP-DAV-----------WYWNYGLSEETKRGLSDKEDLYSPGYLivR 282 Nostoc punctiforme
WP_044037546 177 tpkdnEELSISFYIs--------------EGEFYDrSLIpttma-tpnylFEENNYYKIDNRTGSLGVDNHFTPYEIniK 241 Clostridium bor...
WP_015395227 177 ypnedDKKIISFMSs--------------AGIFKDrSLIkvqndfnynplIEENHYYEFENRNGFIGLNNHYTPYDIeiE 242 Clostridium sac...
CCY78741     184 itsdvMNMKYFFRAs--------------DGEFIDrSTYpisma-epthiYLSGVLYDLDVRNGLNACDGFYTPYDIciD 248
Q5E353       174 ---ssNGQTLHYRHn--------------GSNTALsAPS-----------YESGLYFSYDARDGRSASDAQVALHTItfD 225 Aliivibrio fisc...
WP_012200358 173 ---ssNGIRLNYTT---------------NGTIASyPTE-----------YTKDLYYGYDARDGREAIGVTASNHNIsvT 223 Lachnoclostridi...
CDF44235     175 -rikgAEDVLYVAA---------------NAQIQEePSH-----------LFGPMYFSQDERDGREKQGRTVCTHSYisE 227
Q8XHY8       173 tpqlnKDINIRFFTy--------------GGKILDkTDK-----------IVDKIYYDVDKSTGDKFVDKCYIPGTVeiN 227 Clostridium per...
WP_013655486 182 ipqfnKEMLIRLWSt--------------EGDFKD-EEQ-----------LTEKVFYDVDQTTGDPCTEQLYKPGSYeiN 235 Cellulosilyticu...
WP_014560813 175 lkfngHPKTLYANIs--------------NGDFVS-QQD-----------WYYNFEYLEELDRGLDFREDLFKPGYFkvN 228 Ignavibacterium...
WP_012412311 283 LQPGDVVT 290 Nostoc punctiforme
WP_044037546 242 LKSFEKkr 249 Clostridium bornimense
WP_015395227 243 LEPFETKK 250 Clostridium saccharoperbutylacetonicum
CCY78741     249 INAGEDKF 256
Q5E353       226 GTESNESf 233 Aliivibrio fischeri ES114
WP_012200358 224 VAAYDELV 231 Lachnoclostridium phytofermentans
CDF44235     228 AETGeiqn 235
Q8XHY8       228 LNPNERKk 235 Clostridium perfringens
WP_013655486 236 IAPYEKKT 243 Cellulosilyticum lentocellum
WP_014560813 229 LNKGDKIV 236 Ignavibacterium album
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