6RIC


Conserved Protein Domain Family
rpo30_N
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pfam12410: rpo30_N 
Poxvirus DNA dependent RNA polymerase 30kDa subunit
This family of proteins is found in viruses. Proteins in this family are typically between 193 and 259 amino acids in length. The family is found in association with pfam01096. There are two conserved sequence motifs: GIEYSKD and LRY. This family is N terminal of the 30 kDa subunit of poxvirus DNA-d-RNA-pol. It has structural similarity to the eukaryotic transcriptional elongation factor SII.
Links
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Statistics
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PSSM-Id: 289195
Aligned: 10 rows
Threshold Bit Score: 209.591
Created: 16-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
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PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
6RIC_S  23 DIRELLSQYVDDAN-LEDLIEWAMEKSSKYYIKNIGNTK-SNIEETKFESKNNIGIEYSKDSRNKLSYRNKPSIA--TNL 98  Vaccinia virus GLV-1h68
Q9Q8R6  16 DIEEMVKRYVPDDV-VPSLLQWASDKAFKFQIKNIINTK-SNIEETKFEPKNNIGIEYSKDVKNKLSYRNKPSIV--TNT 91  Myxoma virus
Q8V3R1  22 DIEAVVNRYVDDTNkAVDLLNWANEKATKFYIRNIFNTK-SNIEETKFEPKNNIGIEYSKDTRNKLSYRNKPLIE--TNI 98  Swinepox virus
Q6TUX7   6 DIKKLAKKYVNNEEdLVKLLQWATEKSTKYYVKNISNTK-LNIEETKFDPKTNIGIEYSKDAKNKLSYRNKPLIS--TNL 82  Yaba monkey tumor virus
P21603  23 DIRELLSQYVDDAN-LEDLIEWAMEKSSKYYIKNIGNTK-SNIEETKFESKNNIGIEYSKDSRNKLSYRNKPSIA--TNL 98  Vaccinia virus WR
Q98202  20 DMREVLARYVEDTDtAEQLLRWATDKAAVYYLRNISNSK-ANIEETKFETANNIGIEYSKDHKNKLSYRNKPLIP--TNL 96  Molluscum contagiosum...
Q070J5   1 mdKEALRKLVGDNEkFEELYAWSRDTSDIYYLRNIVNSK-VNIEETKFSPINNVGIEYSKDAKNRLSYRNKAIIPs-RDK 78  Crocodilepox virus
Q6TVU9   5 RLRDLAAKHT-DAAeAARIARWALDCAQRFALKNIVNTKtSNTDETNFEPAHNIGIEYSKDAKNRLSYKNKRSLEvdANE 83  Orf virus
Q9J5C0   2 DMMKIIKKYINSEEeAQKLLKWAIDNANIYYLRNIVNTK-VNIEETKFKTVHNIGIEYSKDNKYKLSYRNKPSIA--TNE 78  Fowlpox virus strain ...
Q08FV8  19 DIENIIKKYINDSNeINDLINWANINANKFQIRNIFNTK-SNIEETKFEPKNNIGIEYSKDTKNKLSYRNKPLIEthTSV 97  Deerpox virus W-848-83

6RIC_S  99 EYKTLCDMIKGTSGTEKEFLRYLLFGIKCIKKGVEYNIDKIKDVSY-NDYFNVLDEKYN 156 Vaccinia virus GLV-1h68
Q9Q8R6  92 RYEDICNMIKTTNGAEKEILRHALFAIKCIHKGVEYDIDKLPDVDYvDMYFNVLDQKHN 150 Myxoma virus
Q8V3R1  99 DYKDICDMIRMTNGTEKDILRYILFGIKCIKKGVEYNIDKLIDVNH-DDYFNVLDKKYN 156 Swinepox virus
Q6TUX7  83 EYLDICDLIKVTNGAEKEILRYLLFGVKCIKKGVKYNIDDINDIDY-REYFDVLDKKYN 140 Yaba monkey tumor virus
P21603  99 EYKTLCDMIKGTSGTEKEFLRYLLFGIKCIKKGVEYNIDKIKDVSY-NDYFNVLDEKYN 156 Vaccinia virus WR
Q98202  97 EYEYLCDLIKSTSGGDKETLRYLLFGIKCVRARVEYDIDKLPDYNY-DKYFHVLNER-S 153 Molluscum contagiosum virus subtype 1
Q070J5  79 RYHALTTAIEKTNGKDRDLLRYFLYGLKCLDAGVEYDLEKLQDYDY-DKYFSVLSDKSN 136 Crocodilepox virus
Q6TVU9  84 DYADLRAQIRATSGTEHDALRYLLFAVKCVAARVPYDIEEVPDHDY-SGYFNVLDEKFN 141 Orf virus
Q9J5C0  79 KYKELCNLIRSTNGIEKETLRYLLFGIKCVHAKVEYDIEKVPDYDY-SNYFDVLKEK-S 135 Fowlpox virus strain NVSL
Q08FV8  98 EYADICNMIRITNGIEKEVFRYLLYGIKCIKKGVSYNIDNLSDINN-DDYFNVLDKKHN 155 Deerpox virus W-848-83
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