5JPQ


Conserved Protein Domain Family
U3snoRNP10

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pfam12397: U3snoRNP10 
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U3 small nucleolar RNA-associated protein 10
This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with pfam08146. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Statistics
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PSSM-Id: 403559
View PSSM: pfam12397
Aligned: 149 rows
Threshold Bit Score: 47.9743
Threshold Setting Gi: 219118769
Created: 21-May-2020
Updated: 7-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
5JPQ_G        249 QQIGPVlSEAMVmKDvPGIQIASYMVVAILAAKGS-LNDNILTAFMEQLVHg--WT--VDTLRPGLVCLTMLAQHRS--A 321  Chaetomium th...
6_pfamImport    3 TTVLPSiLKGLSsy-vLDFTCAAFMIVTQIMVKCPaLNEKLLNSWIARISVvpfENmrSEI----ILILSCMFQRQS--T 75  
EDW37303      238 STILEAlLQGLV-SDtIDFMAASYVIVAQLVSRTK-LKSKVCDALLERVANc--PF--ERLQTESLLLLVCIYGKQQaaG 311  Drosophila pe...
XP_004929187  238 TALLPTlMKGIE-SPiADFRASCYIIIGYLFTKTK-LKEKTLNQILDRMLTtefdl-----sydvVLLIVMMYEHQ---- 306  domestic silk...
Q7PWD6        237 TAVLHTvGKGLA-SRaIDFAAGSFMIVGQLVMKAS-LAQLTVDYLARRVIAv--QL--PALTAEATMLLVLIFQTQHerL 310  Anopheles gam...
ETN64993      236 VSLLQAlGKGLT-SSaVDYTAASFMIIGQMVTKTS-LLKETVEYIIRKLCQl--QH--PALTTDATMLLALIFKTQHeqL 309  Anopheles dar...
Q17LU6        237 TALLRTlIKGLN-SKaIDFTATSYMIVGHLVTKTS-LAKQTLESFLKRLCVl--IH--PSLSGDAAMLMVLISDTQKeqL 310  yellow fever ...
EDS36177      237 VAIIKTlVKGLS-SKaLDFTAASYMIVGHLVSKAT-LAKKTLEKILQRLAVq--MH--PSLTGNAVMLMVLILQTQQeqI 310  southern hous...
EFX87391      236 AILLPSlLNGLV-SKfPDLIAGCYMIIAQLNRKAN-LNQRVVEDLALCILKg--MI--PALSSEAITLLIVLWDKQKdrV 309  common water ...
EFN88053      237 NYLLPTlFYGLK-SSvLDLTAASYMIIAHLMTKVK-LDDCTIEKILLKTFKk--TN----LKQEATTLLLYLYQSPInrL 308  Jerdon's jump...
5JPQ_G        322 k--qLS--GRVAKAVIKVPDlvSSLRDIS--------------KEHQV--DKLANGLVLAF 362  Chaetomium thermophilum
6_pfamImport   76 nmefFP--SEHLVKFVANRWvpESISELY--------------AM-GVntKSLVEVLVKSC 119 
EDW37303      312 p--qLK--PETVLNFIGQKWliAALASLA--------------NG-NFaiQSLCMPLMTGa 353  Drosophila persimilis
XP_004929187  307 ------------KHITKm---sDVIFNISvdmmhtfcghikvlVAKKTniRPFVLAFLKKV 352  domestic silkworm
Q7PWD6        311 a--tLS--RELMGEIRRCKWlaPTLCTVK--------------AD-GVdvLVLYRKLLEKC 352  Anopheles gambiae str. PEST
ETN64993      310 g--nLS--DTLIETIVSSKWltTAMSEIK--------------TD-GIciIVFYRKVLEKC 351  Anopheles darlingi
Q17LU6        311 g--eFS--DELVASILGAKWlpFALSRIK--------------KD-GInvTPLFRAILEKC 352  yellow fever mosquito
EDS36177      311 g--eLS--DAVIATIMSAKWlpQALGRVK--------------QE-GVsvVTLLRAVLGKC 352  southern house mosquito
EFX87391      310 f--nVNhmRNCIEFLKSNAEflPSIGILA--------------SCYQV--SSFVSPVIQGF 352  common water flea
EFN88053      309 t--vIP--QSLVLQLSSLLWfiETVSQIH--------------SK-SMnaSRFAVPFLQAa 350  Jerdon's jumping ant
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