6S85


Conserved Protein Domain Family
SbcD_C

?
pfam12320: SbcD_C (This model is not part of the current CDD release)
Type 5 capsule protein repressor C-terminal domain
This domain is found in bacteria and archaea. This domain is about 90 amino acids in length. This domain is found associated with pfam00149. SbcD works in complex with SbdC (SbcDC) which is a transcription regulator. It down-regulates transcription of arl and mgr to inhibit type 5 capsule protein production. It acts as part of the SOS pathway of bacteria.
Statistics
?
PSSM-Id: 520202
Aligned: 180 rows
Threshold Bit Score: 31.1851
Created: 16-Feb-2025
Updated: 28-Apr-2025
Structure
?
Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
6S85_A         275 VTQPMAVLK--GDLASITA--QLE-QWrdvsqepPVWLDIEI-TTDEYLHDIQRKIQALTESLpveVLLvr-------rS 341 Escherichia coli
CDC94264       265 pKTKLAVLK--DKLENLLSeayq-------efrtGYYLSIRV-TDEEILEYPVQRLQQVFSGM---LEC----------- 320
jgi:Bfae_27310 274 VPRRLTELR--GTLAQLLA--QRDgHA-------GDWVKAVV-TDPARPAHLQEQLREAFPHL---LLTeya----pegR 334
8_pfamImport     1 VPRPLARLR--GRLASLLEdpALErHR-------EAWVEATL-TDPVRPDEPMARLTERFPHV---LALvld----perA 63 
2_pfamImport     1 VPRPLARLR--GSIEELLEspELDrHE-------ESFVEATL-TDAVRPADPMARLTRRFPHV---LSLvfe----pdrA 63 
WP_020938651   266 VPRPLARIR--GTLEDLLAdpELArHE-------DAWVEATL-TDPVRPADPMARLAERFPHT---LSLvfa----perA 328 Streptomyces ...
6_pfamImport     1 VPRPLARIR--GPLEDLLAdpALDrHE-------DAWVEATL-TDRHRPHEPMARLAERFPHI---LALafe----pegA 63 
WP_012934431   267 VPRPLAALR--GTLDELLAdpRLReRE-------SAWVQATL-TDPVRPSDAMERLRRRFPHA---VALafd----pqgG 329 Conexibacter ...
14_pfamImport    1 -GRPLVRWTaaGGLAEVWRwlde-------grdpRAWIDLEIhTADLIAPEEIARLRKAHDGI---VHIrpvfpeeagrG 69 
10_pfamImport    1 -GRPLVHWKakGGLSEVHQwlee-------gkdpTAWIDLEVhLTETMSLEQIHKLRQTREGF---IHIrpvypemeavL 69 
6S85_A         342 REqr---erVLASQQRETLSEL--SVEEVFNRRLALEE 374 Escherichia coli
CDC94264       321 -RienrrtlAQGIMETADLSAIkkTPESLFAEFYEKQN 357
jgi:Bfae_27310 335 EA-------REGTPVVRREQ----NPLEVMDEFLAHVT 361
8_pfamImport    64 PE-------DPRASYAQRLDGR--DDHQIAEDFVAHV- 91 
2_pfamImport    64 PS-------DASASYAQRLRGR--SDQQIAEDFVAHV- 91 
WP_020938651   329 AD-------DPAVSYARRLAGR--SDQQIAHDFVAHvr 357 Streptomyces collinus
6_pfamImport    64 QD-------RDGVSYARLLHGR--TDQQIAEDFVS--- 89 
WP_012934431   330 Q--------SAPGDSYQRLRGL--DDDELVRRFIADVR 357 Conexibacter woesei
14_pfamImport   70 G------------TEAAQRDQL--PVDELFCRFYAQKT 93 
10_pfamImport   70 Q------------SEAVSATKA--PMDELFRRFYERQT 93 
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap