Conserved Protein Domain Family
CsoS2_M

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pfam12288: CsoS2_M 
Carboxysome shell peptide mid-region
This domain family is found in bacteria and eukaryotes, and is approximately 430 amino acids in length. This family is annotated frequently as a carboxysome shell peptide, however there is little publication to confirm this.
Statistics
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PSSM-Id: 403489
Aligned: 10 rows
Threshold Bit Score: 486.576
Created: 24-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_006460162   152 GRLVARTYRKAQS-EGKAal---kAKLSSSSSVSSIAK----MANPD----ANG----------------RQIAREVRHQ 203 Thiomicrospir...
jgi:Thimo_2949 169 GRAAALARRRAQSaRGKA------GVSAAGMSPAQTAR----AANPE----LSG----------------RELAKRLREQ 218
Q31HD7         148 GRLQSKAYRKAQA-KGKAgq--eaFKSNGSSQSGAKAK----LANPD----AST----------------REIAQQVRAE 200 Hydrogenovibr...
Q3SFK6          15 GREAALARRRALSiHGKSalqsgqAAKPRSATEARLAA----RATPP----ASTpaasaapaascgcqhgETFAARVEEA 86  Thiobacillus ...
tigr:AFE_1689  154 VRKLCQERRRALStQGKV-----------ASSCSRVSRishnSGQPDalagLSG----------------RDAAQARREA 206
CAK27724       176 SRSLVLARREAQSkRGKA------ATTSQSSGTAAVAR----QGNPD----MSS----------------RELALKVREL 225
WP_015107692   184 SRAIVMARREALSkRGKS------ASAPTSSVAASVAR----QSNPD----MSS----------------RELAQKVREL 233 Cyanobium gra...
CAK23106       175 SRALVLARREAMSkHGKT------A-GKQPTSAAAVAR----QANPD----LTS----------------RELAQQVREL 223
Q46GM9         187 SRAFVLARREALSkHGKS------A-GKQPTTAASVAR----QGNPD----LTT----------------KEIAQRVREL 235 Prochlorococc...
Q7V6G0         186 SRALVLARREAQSkHGKT------A-ANQPTSAASVAR----QGDPD----LSS----------------REISQRVREL 234 Prochlorococc...
WP_006460162   204 R---------------------CTQG-------KTss-gvCRPTG-----KVARKP-AASEPYPAKVGFSQTGYDQTVSG 248 Thiomicrospir...
jgi:Thimo_2949 219 R---------------------SHRGga---gqKR-----SAPSGrsravRTGASP-GAAQDAPWKVGASETSHGQTVTG 268
Q31HD7         201 R---------------------CAQG-------KTcstggSRP---------MRKR-RNAKEAPQKVGESQTLHGQSVSG 242 Hydrogenovibr...
Q3SFK6          87 RpaaapvapapisavrkrrieqSQKG-------RGda-ppCRPCG-----RVKPEP--------PKVQTGTTLAGSTVTG 145 Thiobacillus ...
tigr:AFE_1689  207 M---------------------CQKG-------RSdq-saYRPSG-----RTRQKP-----AAPAKVEQGTTLSGTSVTG 247
CAK27724       226 R---------------------SKSGaaskfggKAag-apTRPTGp---nRHGAKQ-AAAADAHWKVGASETLSGQTVTG 279
WP_015107692   234 K---------------------CKVGsa---gsSRsg--gSRPTGp---rRGQAKI-DAAADAHWKVGVSETVRGQVVTG 283 Cyanobium gra...
CAK23106       224 R---------------------AKAGar---nkQSag--vTRPTGp---nRHGAKQ-AAAADAHWKVGESTTSSGQTVTG 273
Q46GM9         236 K---------------------SKTGat---gsKRts--vTRPCGp---nKNGAKQnASVPDAHWKVGISETSTGQIVTG 286 Prochlorococc...
Q7V6G0         235 R---------------------SKSGat---gkKRsg--aCRPCGp---nRNGSKQ-AVAADAHWKVGLSETSTGQVVTG 284 Prochlorococc...
WP_006460162   249 TMVSD-TYKMTGSEAGSCRVISGTEYTSPDEFQAKCS-FKPea-nPRKVA---MTKTAAGRHVSG-TEVGLSEKVTGTEP 321 Thiomicrospir...
jgi:Thimo_2949 269 TLVGR-SHEVTGDEASTCRTVTGTEYLGTDIFRDFCQ-VEP----PKSVKrggVSPTRGGNRVTG-NEVGRSRKVTGDEP 341
Q31HD7         243 TQVGQgEKKMTGSESGACQLVSGTEYLGAEEFSKNCD-VQPtp-qPAKVT---QTQTTRGQVVSGsTKVGRSDKMTGNET 317 Hydrogenovibr...
Q3SFK6         146 NQVER-TTRVTGNESGTCRTVTGTEYVGAEQFGEFCG-TLPep-aPAKVG---QTSTSRGRRVTG-TEVGRSTRVTGDET 218 Thiobacillus ...
tigr:AFE_1689  248 TQVER-SAKVTGAEPGSCLAITGTEYIGTEQYGALCT-ATPep-aPAKVN---VGRTTRGQRVSG-VELGHSVKVTGDEH 320
CAK27724       280 TQANR-SPKTTGNEASTCRSITGTEYLGAEVFQAFCQ-GQPaaqqPAKVR---VTSTSRGNAVTG-NEVGRSEKVTGDEP 353
WP_015107692   284 TQANR-SLKTTGNEASTCRPVTGTEYLGAEIFRTFCQ-SDPtplqPAKVR---VSATSHGNRVTG-NEVGRSEKVTGDEP 357 Cyanobium gra...
CAK23106       274 TQANR-SVKTTGNEASTCRSITGTEYLGAEVFQTFCQ-QAPepttPAKVR---ITATSHGNRVTG-NEVGRSEKVTGDEP 347
Q46GM9         287 TQANR-SLKTTGNEASTCRSITGTQYLGSEVIDSFCNgSNTqisqPAKVA---VTSTSHGNLVTG-NEVGRSEKVTGDEP 361 Prochlorococc...
Q7V6G0         285 TQANR-SSKTTGNEASTCRSITGTQYLGSEVFDTFCQ-SAPqpgqPLKVA---VTNTSHGNRVTG-NEVGRSEKVTGDEP 358 Prochlorococc...
WP_006460162   322 GQCRGVTGTEYLPADQGEMFCGSKPESGPSK----VSQSRTAKNQIISGPSMLPREAMTGLEAGSERAITGTQYLshvak 397 Thiomicrospir...
jgi:Thimo_2949 342 GTCQSVTGTEYMGANLQEAFCGIKPENGPAE----FGSAAARGSQRATGREVGRSGRATGDETAAKRTLTGTQYM----- 412
Q31HD7         318 GTCSAITGTEYLPADQSKMYCGETPAKSKATgfsvMSQATQKSEQKVTGGDSRKSQSTTFKPKNPAs------------- 384 Hydrogenovibr...
Q3SFK6         219 GTCKRVTGTEYLAAEQAGEFCGTTPEPRPEK----AVMGMTAARNAVSGSDLARNVNVTGGEAGAARSITGSAYAd---g 291 Thiobacillus ...
tigr:AFE_1689  321 GTCKAVTGTEYLSADKFESFCATRPALTPAK----VSVAATEAGQRVSGTEVGRSARVTGDEPGSCRKLTGSQYYqpesf 396
CAK27724       354 GTCKAVTGTEYIGADQASAYCGGV-TPSVAK----VGRGVTAGGQAVSGVMVGRSEKVTGNESGSGLQLTGDQYI----- 423
WP_015107692   358 GTCKNVTGTEYISANQSTAWCGTT-TPSPRK----VGLTRTSAGRPVSGVIVERSERVTGNEPGAHRQLTGTQYV----- 427 Cyanobium gra...
CAK23106       348 GTCKNVTGTEYISANQSAAYCGSG-VTSPRK----VGHSLTEQGRPVSGVMVGRSASVTGDEAGSGRSLTGDQYL----- 417
Q46GM9         362 GTCKNLTGTEYISANQSNNYCGGV-NPSPSK----IGYSQTIDGQKVSGTMTGRSALVTGNEAGSNKGLTGDQYL----- 431 Prochlorococc...
Q7V6G0         359 GTCKTLTGTEYISANQANQYCGVS-QPSPRK----VGQSVTEDGRKVSGVMVGRSEKVTGDEAGSNRQLTGDQYL----- 428 Prochlorococc...
WP_006460162   398 LAKEPSRqarpgimsVPTKVDVSETSAGNRVSGTNVNFYKPVTGDEAGFCKTVSGNEYQSREARSARCGDTLQPAAKKVA 477 Thiomicrospir...
jgi:Thimo_2949 413 PIDQPEA--------VPPKVGHSATSSGGTVTGTLVGRHKAMTGDEAGSCRNVTGDDYIGLEQFIEFCDATPPRTERKIG 484
Q31HD7         385 ---------------APHKVMPSQTAKGNTTTGSQVGRLESVTGGERGSCHAVTGTGYQGAEEAKA-CDMPMTETADKVT 448 Hydrogenovibr...
Q3SFK6         292 SARSTTEg------rGPKKVETRRTGAGATVSGTLPGRSSKLSGDEPGACARVTGSDYVNTEEFVSFCRTEPYQSPAKVG 365 Thiobacillus ...
tigr:AFE_1689  397 GSLCRDGg------sAPHKVSVMSTLREHALTGTETAPGNRVTGTERGVCASVTGTESAGLAQYQA-CNRKPVPTPEKVG 469
CAK27724       424 GSEAPIAg------rGPTKVTSLNTLRGTGVTGTAVGRASRMTGNEAGSCRAITGDEYIGSQQYEGFCGTRPPAEAPKVG 497
WP_015107692   428 GDQSQVPg------rAPAKVSSLHTLRGTGITGTHVGRSEHVTGDEPGSCRLVTGDEYIGTQQYEQFCGTKPAPEAPKVG 501 Cyanobium gra...
CAK23106       418 GSDPLPDg------rPAAKVGLSGTLSGTGVTGTMVGRSAQVTGDEFGSCHRVTGDQYISAEQVNAFCGGKPEPEAAKVG 491
Q46GM9         432 GSDPLPSg------rPAEKVGSLTTIRGNGVTGTDVSRRENVTGNEAGSCKNVTGDEYVGAGQFDSFCGSKPAPDPAKVG 505 Prochlorococc...
Q7V6G0         429 GVDPLPEg------rSAEKVGSFNTLRGAGVTGTNVARSEYVTGNEPGSCKRVTGDEYVGPQQYNTFCGGKPNPEAAKVG 502 Prochlorococc...
WP_006460162   478 ESKTFAGHKITGDRAGLGGKITGAGAGRCKSVTGSSYQSLDAV-EECDLP-IERVKPDYMNRPGFAAKPTTGTQPGPMG- 554 Thiomicrospir...
jgi:Thimo_2949 485 VSATLGGERITGTMTGRAPRVTGDEPGTCKAITGTPYAGAEQYqAYCESTqAGQAVVRMQPDKRTFGAVMTGIQPAVDGr 564
Q31HD7         449 ASGTAGGQKVTGDRSGAYYGMTGAEAGDCKTITGTSYTGTEQF-QFCSVDeQNEMKVRQRKGAN---PSISGVQPGPQG- 523 Hydrogenovibr...
Q3SFK6         366 VSRTFAGQDVSGTQVGRAARVTGDEHGTCKPVTGTSYIGAEQYaEFCAARtAAEAINRARLSRN---ADLTGIQPGPDAk 442 Thiobacillus ...
tigr:AFE_1689  470 VTHTWHEQPVSGTSVERSPKVTGDEYGGCQPVTGTEYAGPDQYaAFCASDhQATAQALMAKQSGVADAMMTGIRLGPDNk 549
CAK27724       498 FSITNRNQVVSGTRTGRSAMVTGDEPGSCKAVTGTPYAGLEQSgEFCGARaVDSVRERTPVRNS---NRMTGIQPGIGGa 574
WP_015107692   502 FSVTNKALVVSGTRTGRSEKVTGDEPGTCKAVTGTPYAGMEQAgTWCSSDrLSEIRQRTPVRMG---TVMTGIQPGIGGv 578 Cyanobium gra...
CAK23106       492 FSITNRNQVVSGTRTGRSERVTGDEPGSCQAVTGTPYAGLEQAgQHCGTPaVQAIRERTPVRPGTPSAAMTGIQPGVGGv 571
Q46GM9         506 LSITNKTQSVSGTMTGRSHLVTGDEPGTCKAVTGTPYAGLDQAnQWCDNSaSSEVEARTPRKTGTPGARLTGQQPGIGGk 585 Prochlorococc...
Q7V6G0         503 LSLTNKSQTVSGTLTGRSELVTGDEPGTCKAVTGTPYSGVEQAsGWCDTNsVREIQDRTPKLLGTPGAVMTGLQPGVGGv 582 Prochlorococc...
WP_006460162   555 LTGAQQGVCSSVSGTPYQGIDQTSAMC 581 Thiomicrospira aerophila
jgi:Thimo_2949 565 TTGDAKGACEPVTGTPYVGADQAMAVC 591
Q31HD7         524 LTGAQKGACELVTGSHYQGGDQTAMVC 550 Hydrogenovibrio crunogenus XCL-2
Q3SFK6         443 MTGNERGTCQPVSGTPYLGEGQAAAVC 469 Thiobacillus denitrificans ATCC 25259
tigr:AFE_1689  550 VTGSARGEGQVLSGTPYAGTDQRAlhk 576
CAK27724       575 MTGAERGACEDVTGTPYVGADQQAANC 601
WP_015107692   579 MTGAERGACEDITGTPYIGGDQMAEAC 605 Cyanobium gracile
CAK23106       572 MTGDEKGACEAITGTPYVGADQLATAC 598
Q46GM9         586 MTGAHKGACEPLTGTPYVGGDQLADNC 612 Prochlorococcus marinus str. NATL2A
Q7V6G0         583 MTGAEKGACEPLTGTPYVGGDQLVQAC 609 Prochlorococcus marinus str. MIT 9313
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