Conserved Protein Domain Family
CpG_bind_C

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pfam12269: CpG_bind_C (This model is not part of the current CDD release)
CpG binding protein C-terminal domain
CpG-binding protein is a transcriptional activator that exhibits a DNA binding specificity for unmethylated CpG motifs. CpG is made of a PHD1, an acidic, a basic, a coiled-coil, and a PHD2 domains. This protein contains three cysteine-rich domains identified at the N-terminal, central region and C-terminal of the protein, where the central cysteine-rich domain is located within the DNA-binding domain, found between PHD1 and the acidic domains. This domain is found in eukaryotes, and is approximately 240 amino acids in length. It is found at the C-terminal of the CpG-binding protein containing the coiled-coil and PHD2 domains.
Statistics
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PSSM-Id: 520173
Aligned: 20 rows
Threshold Bit Score: 279.195
Created: 16-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
EGT48562     133 ARLRLVEHLPKRVAEHFGDgPAgp-rTLEAEIIEKQVKVREEFKQTTEKESVLIAFLQKLDTFVANQVDLkPLGTEE--- 208
EFX66713     288 ATTRIYQILPQRIQEWGLT-PC----IAEEKNKKELEQIRKQQTDAREALEDLDLKQKELDVITAKAKKF-TVDINSdde 361
EEC11944     167 ATNRIYELVPHRIQQWQSS-SC----HADETSRRQLEQIRKQQLDARNTLQLLEARRTQLEALIERAKQT-PLIEDEeta 240
7_pfamImport   1 ATNRIIEILPERIRFWQST-SS----SADVFSNRELDAIRTEGETAKRLLEELDGKQKELEAMIAEAKKL-PPISEDev- 73 
XP_009018954 340 ATNRIFEILPRRILEWQST-PC----IAEQNNMKLLDKIRYKQLQAKEQLLELEQKRRKLDEIIMIGKRG-TVLNADeev 413
XP_048584367 289 AVRRIQEILPKRMKQWNRE-PC----EADERANEALQKVLKKKQEAQDMLLELDRMSQALESIIQKGEKL-TAIPEEsqe 362
XP_002113663 277 AKERILRVLPNKIKTLRTQ-GL----TADIQGELKIKELERKRKIAEKRLAELDEMSAKLDHFVNWTKMS-SASLEPdan 350
Q9XUE7       186 ARMRLTEILPNRCKQYFFEgPSggprSLEDEIKPKRAKINREVQKLTESEKNMMAFLNKLVEFIKTQLKLqPLGTEE--- 262 Caenorhabditis ...
2_pfamImport   1 AASRIYEILPRRIQEWQRS-PC----VAEEWEKKLLKEIRKEQREAWLHVRDAERRFQELEDVILQAKRQ-VVQENGenn 74 
XP_011612633 314 AANRIYEILPQRIQQWQQS-PC----IAEEHGKKQLERIRREQQNARLRLTEMERRFHELEGIIAKAKQQ-HVQQDEevn 387 torafugu
EGT48562     209 -------RLDDTVSYACLICANnDIPLSKYVKHIELCWARSERAMSFGAPEKNNDK-----IYCEYKEEKTGSYCKRLKS 276
EFX66713     362 adeggdgETES-ATVQCVTCGI-GVTQTNAIRHMERCFNKYESQTSFGSIFQTKIEgn--nMFCDFYNPNNRTYCKRLRV 437
EEC11944     241 -----ddYEESELSTYCVTCGH-EVSARSAMRHMEKCFNKYESQSSYGSIYKTRIEgd--nVFCDFYNPHQKTYCKRLRI 312
7_pfamImport  74 -----deETGDELMTYCVTCGH-EVASRTALRHMERCFNKFESQISFGGVYKTKVEg----VFCDVFNPHQKTYCMRLKV 143
XP_009018954 414 -----dqDDDSDLSTFCITCGH-ELAQKGALRHMEKCFNKFESQTSFGSIYKTRIEgd--pMFCDFYNPHQKTYCKRLKV 485
XP_048584367 363 ----admDTDTDLQIHCVTCGL-LLAPRVALRHMEKCYMKNESLTMFGSAYKSAGT-----LFCDYFNAQQGIYCKRLRV 432
XP_002113663 351 ----edgNEDTDLQIYCVTCGH-SIPPRNAIKHMEKCYIKEESLTSYGSKYATNVGpnevsLFCDEYNAQQGTYCKRLRV 425
Q9XUE7       263 -------RYDDNLYEGCIVCGLpDIPLLKYTKHIELCWARSEKAISFGAPEKNNDM-----FYCEKYDSRTNSFCKRLKS 330 Caenorhabditis ...
2_pfamImport  75 n---krySKHSEHQIFCVSCGH-SVNSQVALRHMERCYAKYESQMIFGSLEPTRIEgv-srLFCQVYSPQSKTYCKRLKV 149
XP_011612633 388 ----egdSDDTDLQIFCVSCSH-PVNPKVALRHMERCYAKYESQTSFGSMYPTRIEga-trLFCDVYNPQSKTYCKRLQV 461 torafugu
EGT48562     277 LCPEHRKPGVEQHLMVCGYPKkwidm------fgtsTYtGTFselialeDPFGDEgCRTLKEVCSMHLKWIPSIRGCIEL 350
EFX66713     438 LCPEHCKDPKVNDTDVCGYPS---------------VR-NVF-------DETGEF-CLIQKKKCVKHNNWEKLRRAEIDM 493
EEC11944     313 LCPEHSKEPKVNDDEVCGFPL---------------VS-NVF-------DHSGDF-CNLPKKRCSKHYCWDKFRRAEIDM 368
7_pfamImport 144 LCPEHTKEQKIPDNEVCGYPL---------------VT-NCF-------ELTGTY-CRLPKKKCMRHYCWEKLRRAEIDM 199
XP_009018954 486 LCPEHTKEPRAPENEVCGCPL---------------VS-NVF-------EPNGEF-CRVSKRKCVKHHCWEKLRKAQIDM 541
XP_048584367 433 LCPEHTKEPKIPQTAVCGCPL---------------VT-NVF-------EETDKI-CSAPKRTCMKHYRWDKLRRAEIDL 488
XP_002113663 426 LCAEHTKEPKIPANEVCGCPL---------------TR-NVF-------EETDDF-CRVRKRSCIKHYRWERLQRANIDR 481
Q9XUE7       331 LCPEHRKLGDEQHLKVCGYPKkwedgmietaktvseLI-EME-------DPFGEEgCRTKKDACHKHHKWIPSLRGTIEL 402 Caenorhabditis ...
2_pfamImport 150 LCPEHSREPKAPADEVCGCPL---------------VR-NVF-------ELTGDF-CRLPKRQCNQHYCWEKLHRAEVDL 205
XP_011612633 462 LCPEHSRDPKVSVDEVCGCPL---------------VK-NVF-------ELTGDF-CRVSKRKCNKHYNWEKLRRAEVDL 517 torafugu
EGT48562     351 EQAGLFQRLFDLVTENSRLQDRLEWNSNALSIM 383
EFX66713     494 ERVRQWLKLDELFEKERQIRTAMAQRAGLLPLI 526
EEC11944     369 EIVRQWLRLDELYEQERSTCTSMTSRGGVLGLM 401
7_pfamImport 200 EKVQKWLKLEELFEKEQKIRYTLQNRGAVLGLL 232
XP_009018954 542 ERLRQWMSLDDLFEQERQVRTAMANRAGVLALM 574
XP_048584367 489 QRVQQWIKLEEAFEQERAITHTSAQRGGVLGLL 521
XP_002113663 482 ERIQQCLLIEETYEQIRIIQTAKEGRRGLLGIM 514
Q9XUE7       403 EQACLFQKMYELCHEMHKLNAHAEWTTNALSIM 435 Caenorhabditis elegans
2_pfamImport 206 EQLRAWGKLQMLWKQERNIQMAKANRAGLLALM 238
XP_011612633 518 ERVRVWYKLDELFEQERNVRTAMTNRAGLLALM 550 torafugu
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