3CW1


Conserved Protein Domain Family
U1snRNP70_N

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pfam12220: U1snRNP70_N (This model is not part of the current CDD release)
U1 small nuclear ribonucleoprotein of 70kDa MW N terminal
This domain is found in eukaryotes. This domain is about 90 amino acids in length. This domain is found associated with pfam00076. This domain is part of U1 snRNP, which is the pre-mRNA binding protein of the penta-snRNP spliceosome complex. It extends over a distance of 180 A from its RNA binding domain, wraps around the core domain of U1 snRNP consisting of the seven Sm proteins and finally contacts U1-C, which is crucial for 5'-splice-site recognition.
Statistics
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PSSM-Id: 520139
Aligned: 123 rows
Threshold Bit Score: 30.6162
Created: 16-Feb-2025
Updated: 25-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3CW1_K         3 QFLPPNLLALFAPRDPIPYLpPLeklpheKHHn-QP-YCGIAPYI-------------REFeDprDAPPPTrAETR--EE 65  human
Q6CU32        18 TKLPSSVSKLFTQGPPLP---PSrvrvrrNQNkkYA-LTGVSAVL-------------QHV-SeyKKATHPvSENQ--HL 77  Kluyveromyces l...
XP_001642396   6 SKYPNDVALLMKPRAPLKFLkQSdnplnqRKTn-pN-ISGVSSLLs-----------nNTL-TdyMNEFPVgTDNK--HL 69 
XP_004179783   4 SKFPNDVAKLFKPGPPLQFQnNTsyyksnKVFhdLK-LSPLADVLkmtktqgermsdsSIL-DdyLQEFPQgSDNN--HL 79 
XP_003959840   6 SKFPSDVTRLFKPNPPLPYKrPSdypeeqRRTn-pN-ITPVSNYL-------------AQL-TdyINEYSDgTPNK--HL 67 
XP_003676755   6 SKLPSDISHLFKPGPPLRYFkSTdyppskRQTn-pN-ITGVSQFLs------------NNL-QsyLNDFPSdSQTKvdED 70 
XP_003683264   6 TKFPADVSRLFKPRPPLAYKkPVdyplekRQTc-pH-ITGVSQILd------------KPL-AgyLSDFPQgSQNK--YL 68 
XP_002551654   2 iKFPQNVSKLFRPGPPLQYKkPVdypveeRKT--ANkIQSLSGYL-------------GAL-DtyRSEHPEgSENG--HL 63 
Q75AJ0         6 SKFPDRVSSLFKPRPPLQYRkPVdyapeeRKTa---tITPVSSVLg-----------tDAL-MryMQEFPTgSENL--LI 68  Eremothecium go...
XP_003646204   6 SKFPERVSKLFNPRPPLQYKkPVdyppekRRTh---fIAPLSSLVf-----------sDTL-VryMQEHPQgSENR--HL 68 
3CW1_K        66 RMERKRREKIERRQQEVETELKMWDPHND 94  human
Q6CU32        78 KVYDEAMNESHKEQEELMKKIQEWHPESD 106 Kluyveromyces lactis
XP_001642396  70 QKYELVRNQKINELNKLDDELMKWNPNND 98 
XP_004179783  80 KKIDELKTKTINHFNKLESYLSEWNPDED 108
XP_003959840  68 EAYEEIRTSQLQNLEYLHNELQKWDPMND 96 
XP_003676755  71 KQFEEVEKERI---SKMNESIRNWDPHND 96 
XP_003683264  69 QDYEKAADSKNREQRELENKLSEWDPQND 97 
XP_002551654  64 DAYNAAENARQVEAKALNAKLAIWNPDED 92 
Q75AJ0        69 QRYEELKTINSRKEQELEEELAKWAPEND 97  Eremothecium gossypii
XP_003646204  69 DKYEEVRSLTARNERLLEAEQAKWVPEED 97 
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