5XVJ


Conserved Protein Domain Family
Alfin

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pfam12165: Alfin (This model is not part of the current CDD release)
Alfin
The Alfin family includes PHD finger protein Alfin1 and Alfin1-like proteins. Alfin1 is a histone-binding component that specifically recognises H3 tails trimethylated on 'Lys-4' (H3K4me3), which marks transcription start sites of virtually all active genes.
Statistics
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PSSM-Id: 520105
Aligned: 23 rows
Threshold Bit Score: 188.658
Created: 15-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
5XVJ_A         7 EEVFSDFRGRRAGLIKALSTDVQKFYHQCDPEKENLCLYGLPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWIS 86  thale cress
XP_001422648   8 DEVHANFSRRRDGLVKALTRDVEAFYAQCDPDKENLCLYGNPDGTWDVQLPAEEVPPELPEPALGINFARDGMQRKDWLA 87 
XP_003063903   8 EDVFDNFNARREGLIKALTTENSSFYDQCDPDKENLCLYGNPDGTWEVQLPAEEVPPELPEPALGINFARDGMQRKDWLA 87 
1_pfamImport   3 DDIFKDFIGRRTGIVRAFTEDLEAFTAQCKPDLDGLCLYGYANGTWEVAPPAQHVPTELPEPTVGINIPRDTMYKRDWVA 82 
XP_005845979   9 DDVFADYAGRRRGIIKALSTEVDQLWEQCDPSKENLCLYGYSDGTWEVTLPCEEVPPELPEPTLGINFARDGMKRADWLC 88 
XP_002946566   7 RDIYEDYLGRRKAILRALTQDAEKFWHQCDPQKENLCLYGYNDGTWAVDLPAEEVPPEAPEPALGINFARDGMERSAWIS 86 
XP_005847676   7 qAIYDDYKMRREGLLLALIDDSKELWAACSPERDNMCLYGHSDGNWSVDLPVEEVPPELPEPVLGINFARDGMERKDWLA 86 
XP_002993274   8 EAIFEDFRGRRAGIVKALTTDVSIFCDECDP-VKDLCLYGLPDGEWKVTLPVEEVPPELPEPSLGINFAKDGMKRTDWLI 86 
CAG1852794    14 EEVFRDYLGRHRGLVRALTAEVDDLYALCHPERENLCLYGHPDGSWEVNVPPEEVPPEMPEPTLGINFARNGPKRWDWLS 93 
XP_003579830  18 DHVFRQYLGRRAGIVKALTEDVAEFYEQCDPEKAGLCLYGLPDGTWKVNFPVEKIPSILPEPVCGINFARDGTAKKDWIS 97 
5XVJ_A        87 LVAVHSDSWLISVAFYFGARfgFGKNERKRLFQMINDLPTIFEVVTG 133 thale cress
XP_001422648  88 LVAVHSDAWLMAVAFYYGAK--FDAKKRDALFAQINAVPTVYETLSA 132
XP_003063903  88 LVAVHSDAWLMAVAFYYGAK--FDAKEREKLFKSINSMPTVYEVLSG 132
1_pfamImport  83 LLTVFSDSWLLAVAFFHGARlnLDREGRVRLFDLINSVPTVYESVFG 129
XP_005845979  89 LVAVHADCWLMAMTFYNGAK--LDQKGRQRLFEEINSLPTVYEIVSG 133
XP_002946566  87 LVAVHSDSWLLALAFYKGAR--LNREEREELFSLINKLPTCYEVVSG 131
XP_005847676  87 LCAVHSDAWLMSLLFFYAAR--FDADGRAELFSLVNQHPTVYEVVTG 131
XP_002993274  87 LVAVHSDSWLYSVAFYHAAR--LHKADRQRLFGMINNLPTIHEVLAK 131
CAG1852794    94 RVAMHSDSWLLSVAFFFAAR--FSGDERKRLFNLINDLPTIFEAFCS 138
XP_003579830  98 LIAVHSDAWLMSMAFYHAGRlaFDREARTELFRMINSFSTTFEVVRE 144
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