2WP0


Conserved Protein Domain Family
HobA

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pfam12163: HobA (This model is not part of the current CDD release)
DNA replication regulator
This family of proteins is found exclusively in epsilon-proteobacteria. Proteins in this family are approximately 180 amino acids in length. The structure of HobA is a modified Rossmann fold consisting of a five-stranded parallel beta-sheet (beta1-5) flanked on one side by alpha-2, alpha-3 and alpha-6 helices and alpha-4 and alpha-5 on the other. The alpha-1 helix is extended away from and has minimal interaction with the globular part of the protein. Four monomers interact to form a tetrameric molecule. Four calcium atoms bind to the tetramer and these binding sites may have functional relevance. The function of HobA is to regulate DNA replication and its does this by binding to DNA-A, but the exact mechanism of how this regulation occurs is purely speculative
Statistics
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PSSM-Id: 520104
Aligned: 15 rows
Threshold Bit Score: 205.61
Created: 15-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2WP0_B         1 MKNFYDWIKEFIRDQGEFIAqqsgWLELERSSYAKLIAQTISHVLNGGSLLVSADSSRHWFLNYILSNLNpKDLKERPLL 80  Helicobacter py...
Q0PAT4         1 MSDFLSFTLENIRNGGAFMA----WLESRRLEWAPLMAARLKYLLEGRTFVLMCDEQRSWYEEYFLKNIN--SKATRPML 74  Campylobacter j...
WP_012108857   1 MRDIFKWGIEFTQKNKN-LD----WFEIKRESFMPLLAINLHHLLNGKVFIILSDDDRAWFCDYFIYKIN-CSQ-TRPIF 73  Campylobacter h...
Q30Q05         1 MPEFAQWSLDAIREEGGCFS----WLEEQRFDWTITTSQALEQILNGKTVILITDEKRKWFETYLLDFLN-STQMDRPLL 75  Sulfurimonas de...
Q7VII6        23 MENISDWFLRIIREDEKKGIms-gWIEEKRFIFLPSMTYTIEHIIKGGSIIVLTDEKCEWFGDYIITHIN-QSHKGRPFF 100 Helicobacter he...
2_pfamImport   1 MENISDWLLNTIRNDEKRGIss-gWLEEKRFLLLPNMARILKHILEGGSVIILTDEQREWFGDYIITHIN-QHHKGRPFF 78 
WP_012857147   1 MQKFLTWTLEQIRKDGSTMS----WMEEKRFEWVPLCASMLKNLLDGHTFIVITDEDRAWFCHYMLRAIN-NHHKNRPIL 75  Sulfurospirillu...
CBG39408       2 LKN--------IREEHNKIAldsdWLEIERFTLVSLLSRMISHVLNGGTLLVCTEDRLEWFEKFVIQNIN-RPITARPLV 72 
WP_013553602   1 MQQLLEWTLEAIRAENSDFS----WMEEFRFDWVPPAKSAVSRLLEGQSMLLLTDPAREWFAHYVLGSIN-NPQRRRPFL 75  Nitratifractor ...
WP_006655544   1 MQDIVSWTTQILRHDASRPT----WLEERKFEWIPLIKRALQRIFNGESMILVTDRDREWFAHYVIFSIN-KTN-NRPYV 74  Helicobacter ca...
2WP0_B        81 SVIDFNasSFYPKNDAN----------LSLATIEMTYQN-PMFWHVGKIENEGLKtILLSKIPSFLWLFEELKEDCLLLK 149 Helicobacter py...
Q0PAT4        75 PFVSLN--SLCK--KKVqsse---diaLLNDLLDISFPNgYVYFYIGSASDNKSL-IAKSRDDSLLWLFDEQLQDSFYLN 146 Campylobacter j...
WP_012108857  74 PFFKLN--ALYPKFTNTtpke---qiaLICDMLNIVFDDnIVCFYIGKTGTGSYA-LTKNFENNFLWIIDDTIENSFYLS 147 Campylobacter h...
Q30Q05        76 PIISID--SIYRHFNSVsggd---midTVEDVISLAHKDdYFYWYIGRGDDRRAD-IAKRKDTSYFWIFDEEYLNALHLK 149 Sulfurimonas de...
Q7VII6       101 PIVQIK--YLHNMIDSNkegsi-qgfkLIKDMLDMMYSN-YRFWYIGK-KNTRAD-FAKNSGEGWFWIFDE---NNTFLS 171 Helicobacter he...
2_pfamImport  79 PIVQIK--HLHDMIDSSskdggiqgfmPLINMLDMMYSN-YHFWYIGK-KNARSE-FAKHDQQGWHWIFDE----NDIFS 149
WP_012857147  76 PFISLQ--TLYPNLYQVktkd---dieLLENMLSQAFPSgYTFFYVGKNSDIKMQ-IAKRKDDSFMWIMDEHIQNSFYLL 149 Sulfurospirillu...
CBG39408      73 PIFGVS--EILPKIQSQdp-------aLVLDMLSLSYKD-FAFWYIGRAQGDVAK-LALSKDDSFLWLLDDSMQKALNLS 141
WP_013553602  76 PVYPLK--QLFPNLPEIessq---dqqLLEDMLEISFPEgYFFWYIGEGSHRYAK-IALSNEGNFLWLLDEQVPGSFSLR 149 Nitratifractor ...
WP_006655544  75 PIMSIN--ALFPQIDKNqqdd--sevlLISDYLNNIFSQgYFFWYIGKNDALRAK-LALSYEDCFLWIFDTELQNSFTLQ 149 Helicobacter ca...
2WP0_B       150 EHDS-LLDYKLLQLFKLFENALFSVLYNKVT 179 Helicobacter pylori
Q0PAT4       147 SKDK-DLDIKLISLYQLFDVSLDAILFSKVQ 176 Campylobacter jejuni
WP_012108857 148 SKGE-NLDNQLIELTKIFDSAINAVLFEEVA 177 Campylobacter hominis
Q30Q05       150 SYDK-LLDIKLLQLYRLFNASLNAAMFGEVD 179 Sulfurimonas denitrificans DSM 1251
Q7VII6       172 STDE-KLDYKLLSLFKLFDRAILEAMFNRIS 201 Helicobacter hepaticus
2_pfamImport 150 STDE-KLDYKLLNLFKLFDRAILAAMLDKIS 179
WP_012857147 150 SDDD-SLDIKLIQLFRLLDKSIDAVLFAEVT 179 Sulfurospirillum deleyianum
CBG39408     142 TKEKiKIEYKLIQLYKIFEEALFGAMFGNIi 172
WP_013553602 150 RHDP-LLDIKLLQLYRLFDRTVEAALFNEVA 179 Nitratifractor salsuginis
WP_006655544 150 STDP-LVDIKLMQMYRIFNLTIEAALFGQIT 179 Helicobacter canadensis
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