Conserved Protein Domain Family

pfam12149: HSV_VP16_C 
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Herpes simplex virus virion protein 16 C terminal
This domain is found in viruses, and is about 30 amino acids in length. It is found in association with pfam02232. This domain is the C terminal of the HSV virion protein 16. This protein is a transcription promoter. The C terminal domain is the carboxyl subdomain of the acidic transcriptional activation domain. The protein binds to DNA binding proteins to carry out its function. Such proteins include TATA binding protein, CBP, TBP-binding protein, etc.
PSSM-Id: 403392
View PSSM: pfam12149
Aligned: 2 rows
Threshold Bit Score: 34.1416
Threshold Setting Gi: 146387164
Created: 11-May-2020
Updated: 7-Aug-2020
Aligned Rows:
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Sequence Alignment
Format: Row Display: Color Bits: Type Selection:
2PHG_B   1 YGALDMADFEFEQMFTDALGIDEYGG 26  Human alphaherpesvirus 1 strain 17
P68336 465 YGALDVDDFEFEQMFTDAMGIDDFGG 490 Human herpesvirus 2 strain HG52
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