4S20


Conserved Protein Domain Family
RapA_C

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pfam12137: RapA_C (This model is not part of the current CDD release)
RNA polymerase recycling family C-terminal
This domain is found in bacteria. This domain is about 360 amino acids in length. This domain is found associated with pfam00271, pfam00176. The function of this domain is not known, but structurally it forms an alpha-beta fold in nature with a central beta-sheet flanked by helices and loops, the beta-sheet being mainly antiparallel and flanked by four alpha helices, among which the two longer helices exhibit a coiled-coil arrangement.
Statistics
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PSSM-Id: 520086
Aligned: 56 rows
Threshold Bit Score: 381.12
Created: 15-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
4S20_K                  611 DIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTIYDSVYNDLINYLASP-------DQTEgfDDL------IKNCR 677  Esc...
Q6FCX8                  592 RIQIHVPYLIGTAQERMFRWYNEALNIFSSISPTAQTLQENFIVDLKDCLLAD-------LGQKf-EDL------LEEVN 657  Aci...
WP_015486903            555 DIQIHIPVFEGHITQQWATLLNDGLDALSRPNPAAQPLLERNRLEIETALN---------NATDl-TEL------TQKLA 618  Tha...
WP_015819039            518 DVHVHVPFAAHSRTALQFQWFNDVLQCVEQQNPAAGPVHDKVVADVEDDLYS--------EAVLt-EEL------ISQTR 582  Ter...
Q21K39                  517 DVSVHVPCHPESDTAKQLFWYNDILNCVEQQNPASTAIHDKYWQQ---------------------DSLswgsadLAEIR 575  Sac...
Q5QVN2                  526 NIDIYLPYCKGSAEAILLPWYEQGMNAFSQCNAIGRKLYDAFGTDIEQAVAE--------QEPLs-DEL------LKQTK 590  Idi...
WP_014702654            568 PVTIHVPYIEHSAQHHLLDWYDKGMDAFSEVQTIGENLYQQFSAQLQSVMVSp------qDDVAi-KAL------IRETR 634  Met...
WP_014245011            549 DIQIHVPLVKESSEHLLFRWYQEGFNAFTDAAKCGGILFRKFKDEVEDI-----------ENQDi-DSL------IERTR 610  Hal...
PRJNA63271:OPIT5_30475  672 TIRIHVPYVAGSAEECVVEWYHRGLDAFETSLHGGDEYRQRFRDRLLALVQAHgraghttGRAAl-ETL------VAETA 744 
WP_014402951            578 SISLHLILAPESPQHLLAQWYDQGMNAFRHSPADGRQLLAEFGEEVAGAALAQ-------DPDRi-AVL------IKDTH 643  Fra...
4S20_K                  678 EQHEALKAQLEQGRDRLLEIHSNGGEKAQALAE--SIEEQDDDTNLIAFAMNLFDIIGINQDDRGDNMIVLTPSDHMlvp 755  Esc...
Q6FCX8                  658 VQRQALEAELQAGRDRLLEYNSCRPVVAQKIVQ--ALEDYDDNTMLPMFMKRFMSSTNIDFDEQSNGTVIIKPTDQMq-- 733  Aci...
WP_015486903            619 TERTELLAALETGRDRLLELHSCHPTRARKLARdmSIAHIEDEADLNDFLELFADAFGLELIELGGDCITIAPGDHMlvp 698  Tha...
WP_015819039            583 AQVAALQAEIQSGRDALLEMNSCRQPFADELAA--GIADFEQDTP-QALVETASDLLNFHFEATGDASFSLIPSDKMlip 659  Ter...
Q21K39                  576 EELAQLQLKIVEGRDALLELNSCRQPFADQLAQ--SIADFEQATP-EELVSEASELLQFHYEQTFDGIFSLIPSDKMlip 652  Sac...
Q5QVN2                  591 ELHETWLERNREGQDKLQALNACRPETAEKIIE--QIHSDSDTDTLADFMIAFFDRFGVNNEVLDEERWFIRPGEHMrvg 668  Idi...
WP_014702654            635 QQYQILKTQEQTGREKLLAWHSFDPAEAENLLA--ELESASRPIELADFISDFCDAFGIDHQSHSADTVILMPSEQMqqq 712  Met...
WP_014245011            611 AEYKLVSKELEEGRDVLIEKNSYKSDKALSIRS--EIRDIDQSRELRNFLDSVFHHLGVDSDDINEDTLFLRPTDNMllp 688  Hal...
PRJNA63271:OPIT5_30475  745 GFRKTLSQKLKQGRDRLLEINSFDAGVAARVIE--RIREEDTDPFLRRFLLALLDHFGVRVKEDESGDVFLDPAHAYve- 821 
WP_014402951            644 AMHQVLLDQLQAGRDHLLELAANRDLHADDLQR--AFQH-DFDPAQEGFVQRLFEQFGVHPEELSAGIWLLDP-QYLstd 719  Fra...
4S20_K                  756 dFPGL--SEDGITITFDREVALAREDAQFITWEHPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLVELIYVVEAQAP 833  Esc...
Q6FCX8                  734 -VQGLtlDEDGMTATFYRDQAQIREDAQYLTLEHPFIESVMEMINTQSFGSTNVALLKSNALKQGSILIEVWFKVDVVGP 812  Aci...
WP_015486903            699 dMPHL--PEDGFMATTRREVALARDDVQFLSWEHPFVDQALELITSGPAGNAAVGYVENHEFKTGDCYLQLQFAARCPAP 776  Tha...
WP_015819039            660 aLPGI--PPEGTEITFNRALASHREDLLFMSWDATFITGLWELLHHSDLGSASVATLPSKQLPAGHCLLEVCFDVVIQSR 737  Ter...
Q21K39                  653 aLPGL--PAEGVELTYDRDIANSREDLHFLTWDSPFIEGLWELLHHSELGSASVAMLPSRQLPAGHCLLEVCFDFMIQSP 730  Sac...
Q5QVN2                  669 sLPGL--PDDGITITFDRVTALNFEDTDFLSWDHPMVQAALELLTADDFGSTCVAELKNPAIPAGTWFLELDFASIVPAP 746  Idi...
WP_014702654            713 dLPAL--PEEGITGTFQRHKALSREDIAFFSWEHPLIRSAIDTVLSHELGNTAFCTLTDERFPAGTLLIESLCYFDIPAP 790  Met...
WP_014245011            689 hFPEL--DRDGKTYTFNRLMALEREEFGFLTWDHPMVQGVSDLIISESIGSYSVAK--RRESKGTKIFFEFFFIFETIHN 764  Hal...
PRJNA63271:OPIT5_30475  822 aFPSI--PRDGMLATFSRERAIAREDIRFLSADHPLVQDAIDLLTRSPAGSASFGIIRSD---TPNLLLEAVFVLEAVAD 896 
WP_014402951            720 aLPGF--EEGPLSVTFDRKTALSRDDLPLLRLDHPLVGGAIELTLAGELGNAAFLV--DDMLPARSALLQAVFVIECVAD 795  Fra...
4S20_K                  834 KQLQLNRFLPPTPVR-MLLDKNGNNLAAQVEFETFNRQLNAVNRHTGSKLVNAVQQDVHAILQLGEAQIEKSARALIDAA 912  Esc...
Q6FCX8                  813 RSLNLPSSLPRQLVR-VLLSETGQDLSEKIDPVILRPYLHHLDGNSCRQVVKARRDVIEQRYSQALESAKEGLPVLKEQA 891  Aci...
WP_015486903            777 KALRVERYLPPDAMH-LTMTPKGD---LKVNEPECAPFVLPLKRGTGRGLLEQKEAEIKPLIARLEKMGGNQLGKMIERA 852  Tha...
WP_015819039            738 LATACLPFLTSHSVRtLVLDISDKDLSSLLPEEALQQNIQGVKKHLARDVVKSRKDEIGKWYEKAEAFAEQQQQTLLADA 817  Ter...
Q21K39                  731 AAKECLPFIQESSVRsLVLDVGENDLSGILPESALEANLQGVKKHLAREVIKSRKEAIPQWFKKAEDISVAKKSAVQAAA 810  Sac...
Q5QVN2                  747 KAAALQEFCPLQSLR-LLFNGQGQELSAKVSRELLDQQSSFIDKKTARQILRQLRDPAQKIIQSGQQQAREWQQKQLDKV 825  Idi...
WP_014702654            791 PGLHSQRYLPCQYRR-LVLDEKGRQLTESLPSEILDPLAGRIDKPTARQLVSHARNQIELLIRQTWQTLQHDTQKWINSA 869  Met...
WP_014245011            765 QELESNKYFPPKVIR-VLLDNKGEDFSEKWDKSFLDSKVSGGDRDDILKVSKFPKAGVTKIITKANEVAREIAARDKDLF 843  Hal...
PRJNA63271:OPIT5_30475  897 SRWQVDRFLAPTPVR-VLVDVRGRDLTGERDAATIAGEITDGTIQRFLERPGFNATLLRNLVSAATARAEARILDLKAAA 975 
WP_014402951            796 QRLDADRYLPPTPVV-VTVDTRLAEREDFAPSPVAVRKAADRTIEVPR-YRKFLAKLVPPMLERAETLAGTRADALKSAA 873  Fra...
4S20_K                  913 RNEADEKLSAELSRLEALRAVNPNIRDDELTAIESNRQQVMESL-DQAGWRLDALRLIV 970  Escherichia coli
Q6FCX8                  892 KKYYSQKWQYEIDRLSYLKQFNPSIRQDEIDRLTKLQKEGVDLL-EDISLTPSAIQVMV 949  Acinetobacter baylyi
WP_015486903            853 RNKADVAYTDRKARLVALAEHNRNISPAMLAAVDTERAAVLAAI-EDAQLVLDSVRVVF 910  Thalassolituus oleivorans
WP_015819039            818 LEQARAHFEAEITRLRNLAHNNAAVGRDELVALEERRDGVCNALeKHAHLQLSAIRLIV 876  Teredinibacter turnerae
Q21K39                  811 TERAQSFFEGEIKRLKTLKAKNPLIDDAEIALLEVKSQAVQHAInHAAHLQLSAIRLIV 869  Saccharophagus degradans...
Q5QVN2                  826 KQNALDALQHERTRLLELRKKNPSVRSSEIEAINWREEQITAAL-ESPQLSLQAVRILV 883  Idiomarina loihiensis
WP_014702654            870 NHAVEQEINAEVSRLETLQSIQGNSLKAEISLWQHRQSQLLSAI-STGQWRLDAIRVII 927  Methylophaga frappieri
WP_014245011            844 KQNLTKLIARDVERLTYLKSINSSVKDEELQWLEMKKSELLSIL-DQSSVKLDSFRVIL 901  Halobacteriovorax marinus
PRJNA63271:OPIT5_30475  976 AARAETTLAAGRQRLLDLQKLNDNVRPEEIALATEQIANTRAAI-DQARLRLDAIRLIV 1033
WP_014402951            874 LELATTELDAELQRLLALRQVNPSVSEREIGELADERTQLLDAL-PQARLRLDAIRFVt 931  Frateuria aurantia
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