7OK0


Conserved Protein Domain Family
RNA_pol_Rpo13
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pfam12136: RNA_pol_Rpo13 
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RNA polymerase Rpo13 subunit HTH domain
This domain is found in archaea, and is about 40 amino acids in length. It has a single completely conserved residue E that may be functionally important. It is found in the archaeal DNA dependent RNA polymerase. The domain is a 'helix-turn-helix' (HTH) domain in the Rpo13 subunit of the RNA polymerase. This domain is involved in downstream DNA binding, and the entire subunit has also been implicated in contacting transcription factor II B.
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Statistics
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PSSM-Id: 152571
Aligned: 8 rows
Threshold Bit Score: 41.6581
Created: 15-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
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PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
7OK0_Q        22 EEISREEDDEGGEFST----VTISDIEMLLKDTEIWDKLLRNEL 61  Sulfolobus acidocaldarius DSM 639
WP_011839293  11 EEEYMEEEEEETEEKTpprlVRINYLEKFIKTTILWEKFVRGET 54  Staphylothermus marinus
1_pfamImport   1 DEAGKVEEDEEG-VPA----MSLQDIELLTKNTEVWHRLMSGKI 39 
2_pfamImport   1 EEAPLVEEEEGTKAPTte-rFPLEAYEISVELADLWDGAIEGKV 43 
Q975M1        33 HEEKVEAESEEEELPA----LSVADIELLMKNTEIWDNLLNGKI 72  Sulfurisphaera tokodaii
Q980B8        20 NEEKEVEETSEDEFPK----LSIQDIELLMRNTEIWDNLLNGKI 59  Saccharolobus solfataricus P2
Q4JAJ6        22 EEISREEDDEGGEFST----VTISDIEMLLKDTEIWDKLLRNEL 61  Sulfolobus acidocaldarius DSM 639
WP_011822436  16 VTITTAEEEAEEEVVTvdidVNAALLEAMVARTEIIEKLAKGEY 59  Hyperthermus butylicus
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