Conserved Protein Domain Family
Rhomboid_N

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pfam12122: Rhomboid_N 
Cytoplasmic N-terminal domain of rhomboid serine protease
Rhomboid_N is the N-terminal cytoplasmic domain of the rhomboid intra-membraneous serine protease, otherwise known as Peptidase_S54, pfam01694. This N-terminal domain has similarity to other GlnB-like domains, some of which appear to have a binding role, eg to peptidoglycan. It is not clear exactly what the function of this domain is in the protease, but its presence is critical for maintaining a catalytically competent state for the protein.
Statistics
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PSSM-Id: 492385
Aligned: 13 rows
Threshold Bit Score: 102.06
Created: 15-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q5E204         1 MQRLIALSNPRAGQAFIDYMASRHIDIRMMPEGDGQFa-LWVVsDDAYLLEVESELQAFLRNPNDVKYQSASWDMADTrT 79  Aliivibrio fisc...
WP_011704134   1 MIQLLVLDNARMAQALVDYLSTLGISCELTQSELGVS--VWLA-DEQRLAQAQLEVKRFLAEPTHPRYMEASWQSGRA-D 76  Aeromonas
WP_011771702   1 MFLLHQFQNERAAQAFSDYLSAIGIKNNLHHDDFSYQ--LLIE-QKEQQTQAEIELDLFLQHPNDPKYMSASWQTGEVsS 77  Psychromonas in...
Q3IHW2         1 MIELGSLNNPRAAQGFIDYLKSQGLQGELRSTDGST---VIISvLPEHFHQVQPLWAEFTQNPNHARYQQASWEVGST-Q 76  Pseudoalteromon...
Q07W48         1 MIEIGQLPNARAAQAFIDYLKGLNIQCHAVTHSQGVG--LIIT-NPADENQARAELIEFAKNPYDSKYLQASWDNGAT-D 76  Shewanella frig...
Q12I33         1 MIAIGQLDNARAAQAFIDYLRGIGIDCEPVSNEQGVM--LVIH-NAEQQAQAKAEFERFLAEPYADRYLKASWDSGDT-K 76  Shewanella deni...
Q6CZL3         1 MIRVIALSNPRLAQAFVDYMRTQQVHLDMRPQ--GHEaeLWLE-DETQLSKVQEALEIFLRDPTNPRYLAASWQTGSM-D 76  Pectobacterium ...
Q7N9W4         1 MIRVIAISNPRLAQAFIDYMATHQVHLTMRPSHDGQHveLWLE-DDTKLTLVQQELEQFTRDPLNERYQAASWQSGDV-N 78  Photorhabdus la...
Q9KVP2         1 MHLLTTFNNPRAAQAFIDYMAAHHIEIQMMPDAGGQFt-LWVI-QDQHIETAQAELALFLENPYAEKYQAASWEVADQkR 78  Vibrio cholerae
Q6LVS9         1 MHRLAGFHNPRQAQAFIDYMASRGITLSLASEPEGVFa-IWLV-DIEHQVEAESELNTFLSNPNESKYQAASWDVAESrT 78  Photobacterium ...
Q87KM6         1 MKRLVTLNNPRMAQAFIDYMASRQIDIEMMPEGEGQFa-LWLT-DSQHEVEAEAELKQFLANPSASKYSAASWDVADTrK 78  Vibrio parahaem...
Q5QUP0         1 MRRLLSSRDSDWMHKLYQYLRQQGMPVSVTER--GEQleLWLH-QSSYEAAAKTLIQQFKDNPELAAEPVKEQRTSERgS 77  Idiomarina loih...
A6TF43         1 MLMITSFANPRVAQAFVDYMATQGIILTIQQHTQSD---VWLA-DESQAGRVRAELARFLENPADPRYLAASWQSGQT-N 75  Klebsiella pneu...
Q5E204        80 AKFAYGSPN 88  Aliivibrio fischeri ES114
WP_011704134  77 ARIDYSKGM 85  Aeromonas
WP_011771702  78 ENNYFAFAD 86  Psychromonas ingrahamii
Q3IHW2        77 SPLKYQGQS 85  Pseudoalteromonas haloplanktis TAC125
Q07W48        77 TKFDYGPGT 85  Shewanella frigidimarina NCIMB 400
Q12I33        77 AQLDYGAAG 85  Shewanella denitrificans OS217
Q6CZL3        77 TGIQYQRYS 85  Pectobacterium atrosepticum SCRI1043
Q7N9W4        79 HPLKYHNNL 87  Photorhabdus laumondii subsp. laumondii TTO1
Q9KVP2        79 PQFHYASPN 87  Vibrio cholerae
Q6LVS9        79 AKFNYRSPS 87  Photobacterium profundum
Q87KM6        79 SQFHYASPS 87  Vibrio parahaemolyticus
Q5QUP0        78 SSLSFSLLQ 86  Idiomarina loihiensis
A6TF43        76 SGLRYQRFP 84  Klebsiella pneumoniae subsp. pneumoniae MGH 78578
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