2DT7


Conserved Protein Domain Family
SF3a60_bindingd

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pfam12108: SF3a60_bindingd 
Splicing factor SF3a60 binding domain
This domain is found in eukaryotes. This domain is about 30 amino acids in length. This domain has a single completely conserved residue Y that may be functionally important. SF3a60 makes up the SF3a complex with SF3a66 and SF3a120. This domain is the binding site of SF3a60 for SF3a120. The SF3a complex is part of the spliceosome, a protein complex involved in splicing mRNA after transcription.
Statistics
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PSSM-Id: 403361
View PSSM: pfam12108
Aligned: 57 rows
Threshold Bit Score: 37.4069
Threshold Setting Gi: 74877840
Created: 21-May-2020
Updated: 7-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2DT7_A         5 AIS-GPNEFAEFYNRLKQIKEFHRKHPN 31 
KIS66040      84 SAR-ADDALGEFYERLARVREYHDKYPG 110 Ustilago maydis 521
EST07414      82 STR-GDDAFGEFYDRLGRIREYHDRYPG 108 Kalmanozyma brasiliensis GHG001
Q7R8D2        80 TNE-ENDVWKNYYERIKYIKDYHKK-TN 105 Plasmodium yoelii yoelii
XP_015633103  79 STV-QAEIFPKFYDRLKEIRDYHRRNPS 105 Japanese rice
EFJ30765      81 APG-QNNVFSAFYDRLKEIREYHRRHPS 107 Selaginella moellendorffii
XP_009387901  80 TASgTTNLFSAFYDRLKEIRDYHRRHPa 107 wild Malaysian banana
Q9FG01        80 TAT-GTNVFSEFYDRLKEIREYHKRHPS 106 thale cress
ERN14119      80 TAS-GQNVFSSFYDRLKEIREYHRKFPv 106 Amborella trichopoda
XP_022566354  80 TAT-GVNVYSAFYDRLKEIREYHRKYPS 106 rape
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