Conserved Protein Domain Family
MrcB_N

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pfam12102: MrcB_N 
MrcB-like, N-terminal domain
This model describes the N-terminal domain of a group of mostly uncharacterised proteins, including 5-methylcytosine-specific restriction enzyme B (also known as MrcB) from E. coli. MrcB recognises N4- and C5-methylcytosine (and 5-hydroxy-methylcytosines) produced by a broad range of DNA methylases and appears to act against 5-methylcytosine preceded by a purine residue. The N-terminal domain of MrcB has been shown to be a DNA-binding domain, and the crystal structure has been solved.
Statistics
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PSSM-Id: 492373
Aligned: 18 rows
Threshold Bit Score: 190.6
Created: 15-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_015147725   8 TVLREYPQAN-KEDFK--NHPFASYMRNDIAPLLTRYLNL-PEIYKIQSSAGNG-AWATIPWIAVFNNLVTDSVRVGFFT 82  Oscillatoria ac...
WP_015891838   7 EILNSYNNLR-TTPYQptASDEAKLLTNVAPTTIRAALNLdKRKYKVQGSVGAG-KWTDTPWISVFDKEITESAQQGFYI 84  Brevibacillus b...
WP_014081082 147 KILNDYVPSK-KETFA--GHQMGSFFRSDIPLAIYETGIVeSAPYLITGSVGQG-NWAMIPWVCIFDRKITTTATKGIYI 222 Clostridia
Q24ZS0       159 RILNEYVHSK-SETFA--NHAMGKLFRQDVVEALYRA-TIdRDKYLVKGSVGQG-NWATVPWVSILDPRVTTSATYGVYI 233 Desulfitobacter...
WP_013293565   8 RILTEWPKAT-TEPFT--NHPLAHAIRQELRDEVISIIDEkYPNYIVSGSAGAG-NWANVPWLSILNPEITKTTQDGIYP 83  Gallionella cap...
Q6LVP1         9 QVASGWLKAK-NEPFT--NHPIAKLVRQDLIESIKAALGEvHTKYLLKSSPGAG-NWADVPWLAILNPKLTTSTQSGVYP 84  Photobacterium ...
WP_015928553   9 RIIREYPLAR-LDPLP--GHPLAHVIRRGAPDEVRAALPAgAPGLLVKGSPGRGlHWAAVPWIAVFDPAVTTSATQGFYL 85  Methylobacteriu...
Q4JUV8         7 KILSDYGQAK-TQKLA--GHPLASYIRKEAVQTLITDVGIeTDIYKVSGSAGQG-AWAQIPWLSVLDKSITSTPTHGYDI 82  Corynebacterium...
Q6LZ70        11 KILNEYTKES-ENSFK--DNQLMKYVLRDIPEIFENKAALdSNKYKIKASVGQG-NWAEIPWICIFDKEVTETAQKGYYI 86  Methanococcus m...
Q8YA57         9 yMQENYGEQRtNYPMA--GNEVAKKFKQGVKTAFETTLl--GEDYEISASIGTG-GWANVPWIAVHDKEISTSVQEGVNL 83  Listeria monocy...
WP_015147725  83 AYLFCADFSGVYLSLLQGTDSKKKIYGLGVSR------EILRKQAKVFRGMISndFQLE--LHEDIDLkldtipkeTTAR 154 Oscillatoria ac...
WP_015891838  85 VYLFRKDMRGVYLSLNQGTTYVASKFKGLNPK------KKMKQIAENIRQSLD--IDRTifPNESIDL--------KAST 148 Brevibacillus b...
WP_014081082 223 VYLLSKDGNSLYLSFNQGCTDIRKNNSKKDTI------RIMREKAEDIRKRID---SRGfnADNNAKLg-------DGLT 286 Clostridia
Q24ZS0       234 VYLLSADGKTLYLTLNQGCTDLSNSVGKVEAI------RQMRQVAQKVISSVD---CGDfeTSNSISLg-------NDLP 297 Desulfitobacter...
WP_013293565  84 GYLFRPDGLGVYLSIGRGSTNPQKLYGKVQAD------KQADLIVSKIREKMP---ELSkwGQQQVEL--------GAST 146 Gallionella cap...
Q6LVP1        85 VYLFRADGTGVYLSLCFGTTELRQKFGT----------NGAKEKAAELRDEIRkrDKRLssWNEFIDL--------RANT 146 Photobacterium ...
WP_015928553  86 VYLFPADREAVHLSLAQGTVAAIRAHGMRAEAalradgPRLRARLSDFAERLP---------ATAIGL--------GAAG 148 Methylobacteriu...
Q4JUV8        83 IYLFNADMSGVYLSLNQGWAHFENKYGVKLGS------DYIKRIAGYWRGELA--SSLSdfETKSIDLk-------AEGK 147 Corynebacterium...
Q6LZ70        87 VYLFKNDMSGVYLSLNQGWTQYSEKYGSKGAK------LNIKKVSSVYKDILK---SSSdfDFSEISL---------GKR 148 Methanococcus m...
Q8YA57        84 VYLFTNDYQGVYLSLNQGYTYVNKNYKNTK--------LTLGKIARFWQGNLStlKSENgfTIDPINLgr----keSRYT 151 Listeria monocy...
WP_015147725 155 RLGQAYEAGHILSLYYSQVNL--PSSEKMYADILSFIKIYEEL-VE 197 Oscillatoria acuminata
WP_015891838 149 TNAKNYTAAHICGKYYDALAL--PDDEQLKVDLKNLLKIYEQL-KI 191 Brevibacillus brevis
WP_014081082 287 ELGELYQEGMIFYKEYKKGNV--PGESELQNDLRLMMDIYKEY-VN 329 Clostridia
Q24ZS0       298 SLAQMYEAGCICFKKYEQGRV--PSEAVLRQDLSELLNIYQQY-VV 340 Desulfitobacterium hafniense Y51
WP_013293565 147 SLGKSYEKANIAARFYKLNSL--PSNDELKVDLLDSMKFYDEIepi 190 Gallionella capsiferriformans
Q6LVP1       147 ALGRSYEWASAGAKFYDIENI--PHDNELCEDIKELIQIYANMnVK 190 Photobacterium profundum
WP_015928553 149 ELPRGYEAAHILGVTYALAAL--DDERRLRRDLATGLDAYRAL-KA 191 Methylobacterium nodulans
Q4JUV8       148 QRPRGYELGHICGKYYPADDL--PEDFKMVSDLRNLIGVFREL-KG 190 Corynebacterium jeikeium K411
Q6LZ70       149 TLAKGYELGHICGKYYSLSKF--PEEKELINDLRNLIGVYREL-KG 191 Methanococcus maripaludis
Q8YA57       152 NLVKGYESCNIYSKYYDIKDLeeTDNDLLSQDLLQMLTVFKEL-KG 196 Listeria monocytogenes
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