7SAT,7SAZ


Conserved Protein Domain Family
GldM_1st
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pfam12081: GldM_1st (This model is not part of the current CDD release)
GldM N-terminal domain
This domain is found in bacteria at the N-terminus of the GldM protein. This domain is typically between 169 to 182 amino acids in length. This domain has two completely conserved residues (Y and N) that may be functionally important. GldM, is named for the member from Cytophaga johnsonae (Flavobacterium johnsoniae), which is required for a type of rapid gliding motility found in certain members of the Bacteriodetes.
Links
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Statistics
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PSSM-Id: 520065
Aligned: 67 rows
Threshold Bit Score: 134.668
Created: 15-Feb-2025
Updated: 25-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
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PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
7SAT_A          34 VLDGFDKVDKSLTSSIDGSDKRNNLVLSELNTAYRTNPEKVKVWYERSLVLQKEADSLCTFIDDLKLAIARESDGKDAK- 112 Porphyromonas...
WP_002674366    32 VLDAFGLVNQKFESSNKRANEGTSNALAELANKANENQAQYGEIYEQSKQIKELSDGLYSYIQDIKTKVEDVIGQK--Di 109 Capnocytophaga
WP_013870169    32 VLSAFGLMDAKFEESNEVATEKNSALLADLETKAEEKKEEFAVPFNKATQVNAVSDKFFKYIGSLKADILREGNY-SVDp 110 Lacinutrix sp...
7_pfamImport     2 VLSAFGLMNEKFDSANKVAMSSNEQLLSTLNQKGSENAGEFGKAKDIAGKVAQISKDFYAYVETLKADATNGVEL---Dk 78 
WP_011964073    32 VLSAFGLMNEKFEGANTSSDAMNAQMLTSLDSKAAEAKGEFLVASQTAHRVEGITKKFYDYIATLKGTVLEGVEK---Dk 108 Flavobacteriu...
WP_014389297    32 VLSAFGLMNEKFEGANTSAAQTNKDMLTVLDQKATESKSQFGGAAATAHKVVDATKKFYEFVQSLKGDVTKDIEL---Dn 108 Flavobacteriu...
8_pfamImport     2 VLSAFGLMNERFEGSNQSAKSTNQQMLASLDQKAAEAKGEFAMAAVTAHKVEAASNKFYSFIDGIKADITKDITL---Ek 78 
adrc:B739_0220  17 iirsyndTKDTLSQATLLTQSKNKIFEETLRQKAENSPESFSQPYEQYKLLKEKIDALVKFIEASKTEMQKFA---GQDm 93 
WP_014791172    32 VLRSFEGVNTSLTDASALASENNNTFYEQIKNKAKDDAD-YQKVQAKAEEVRAKSNEVFEAIEAVKQQLIAETGYVAPKd 110 Ornithobacter...
7SAZ_A          31 VLSAFGLMNEKLEASNEKANNANINAIQALEQNNAENPDQFAEAFQKSKKVKELSDSFYNYIEGIKGEVMNQVG---ED- 106 Capnocytophag...

7SAT_A         113 ---VNDIRRKDNLDASSVVML--Np---iNGKGSTLRKEVDKFRELVATLMTDk-----aKLKLIEQALNTEs------- 172 Porphyromonas...
WP_002674366   110 pvnQRNYQAMDQSDFTDNYFF--AegaqaKAHASEFIEKMKTYREGVLKVLGDnpaykalADKV-SVNFNTDdvk----n 182 Capnocytophaga
WP_013870169   111 etgKLPFEAMDKTDILDEMWFtgd---reTKKGQEVIAKIEQYKADIKNILGTdvkyqkaIERL-EKRFSTEevk----t 182 Lacinutrix sp...
7_pfamImport    79 etgKLPYEAMDKGPHIDETWFsgd---nySAKGNEIVAKINGYVTALKAATAGqanlsgvIKEV-ESKFNTAdvk----d 150
WP_011964073   109 etgKLPYEAMDKGDNIDNAWFvge---gySPKGKEIVATIEKYKADMKAACPDkky-aniISEI-ANKFDLSdva----n 179 Flavobacteriu...
WP_014389297   109 --gKLPYEAMDKGDKIDELWFsge---nySPKGKAVIDAIETYKSELKAALGNekkyqsiLNDF-LSKFDTKdvk----k 178 Flavobacteriu...
8_pfamImport    79 --gKLPYESMDKGDKLDETWFqge---nyTAKGKAVVDAIETYKLDLKSALGSekkyahiLNEV-LNKFDTKdvm----k 148
adrc:B739_0220  94 askEFNFNALNNTDASTLYFFdkAneaspSKNAEKLKTLMGEVRGLVLKIFPKnsqneaiIERA-NSSFNASv------- 165
WP_014791172   111 geqETSYNSLQNTDAVTNLFFrsq---epSKTGAELKNKINQYHDFMLGQYTS----------------ETDksrvnklf 171 Ornithobacter...
7SAZ_A         107 ---KKDYQVMDKSDYLDQKFF--Vgd-nyKPEGEEFVRQINDYKTQLVELLGGkegtygeLVGKIDGNFNTNdvv----d 176 Capnocytophag...

7SAT_A         173 -GTKGk--sWESSLFENMPTVAAITLLTKLQSDVRYAQGEVLADLV 215 Porphyromonas gingivalis ATCC 33277
WP_002674366   183 rEGRTv--kWLNFNFEGFPYVATLAKLSMMQSDILTTQQEFFDTAL 226 Capnocytophaga
WP_013870169   183 kEGVTk--sWLNYNFQGFPAIASFTKLTAMQNDVKMTEANMFNLFL 226 Lacinutrix sp. 5H-3-7-4
7_pfamImport   151 kEGITk--kYLSYHFEHFPAIASLTKLTAWQNDIKKTETDIYNTLL 194
WP_011964073   180 kDGVKi--kYLEYHFDKFPAVASLAKLSAWQSDVKKAESDVYSAAL 223 Flavobacterium psychrophilum
WP_014389297   179 tDGSTd--kYLNYHFKGFPAIASLAKLSAWQSDAKKVESDVIAAAL 222 Flavobacterium indicum
8_pfamImport   149 tDGSKd--kFLNYHFKGFPSIASLAKLSAWQNDAKKAESDVISAAL 192
adrc:B739_0220 166 -gTNSikkdWLVSKFYNQPLVAALANLEVLQSEARNLQSDALANML 210
WP_014791172   172 sTEGNakkeWLYRMFYNQPMVAALTNLSKIQSDVRTEEGNLVRNLL 217 Ornithobacterium rhinotracheale
7SAZ_A         177 rEGVTr--kWLNYNFEGFPYIASVAKLSMMQSDIRATEQEVYAEML 220 Capnocytophaga canimorsus Cc5
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