8PMP


Conserved Protein Domain Family
SERRATE_Ars2_N

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pfam12066: SERRATE_Ars2_N (This model is not part of the current CDD release)
SERRATE/Ars2, N-terminal domain
This domain can be found in the N terminus of the SERRATE (SE) from plants and its homologue, Ars2, from animals. They play a role in nuclear RNA metabolism. They interact with the nuclear cap-binding complex (CBC) and mediates interactions with diverse RNA processing and transport machineries in a transcript-dependent manner. Interestingly, the plant SERRATE does not have the RNA recognition motif (RRM) domain found in metazoans and S. pombe. This domain has two completely conserved Y residues that may be functionally important.
Statistics
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PSSM-Id: 520057
Aligned: 44 rows
Threshold Bit Score: 95.4088
Created: 15-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
8PMP_D          6 KEFLLSLD-DSVDETEAVKRYNDYKLDFRRQQMQDFFLAHKDEEWFRSKYHPDEVGKRRQEARGALQNRLRVFLSLMETG 84   human
XP_002140670   58 KQFMMNQS-DNLSPSELLDMYDKYRTKHVQKYQQQYLENHKSFVFILERFHPIWLRKVIDERQTLVERRFNIFKDKLVSG 136 
Q5CXB1         53 KQFTLSQD-DNLAPNELIEMYDSYKTKYVQKHQLEFLENNRNSPLILEKFHPIWIRKIIDERRNLVLKRIEVFSLKLKRG 131  Cryptosporidi...
XP_002114974  153 KQFLNSLS-DEIDEEDAIKKYNEYKLDYKRTHCKKFFMIHKGEDWFRQKYHPVDSSAKTEYLKDNVVKRLLTFMEMYDND 231 
1_pfamImport    1 KKFLGKQE-DDISEEDAIKKYNEYKVEHKRHQLERFFRIHKEEEWFRQKYKPDDAKKVKDALLGHIQRRLEVFNELKENG 79  
Q966L5         88 KKFLTSQE-DDISEEDAIKKYNEYKTEHRKHQLERFFRAHKDEEWFRLKYKPDDAKKLREAHLENVQKRLQVFNELKEQG 166  Caenorhabditi...
XP_032218971  158 KQFLATQD-DNIDDMEAIRKYQAYKLDFKKTQLNDFFQQHKDEEWFRMRYHPREAAQRQKELQRSVRRRLNCFLELMEME 236 
XP_020432256  220 KQFLDYQD-DSITPTDAEKKYEEYKLEFSKRQARVFFKDHQTEEWFREKYDPVFLKKKKLEKMEFAKTRVPAFITMLDDE 298 
A0E2A3         69 DQFQELYVsNDIPTEKLRLLYQTYERKWENKQKELFFDQHKDEPWIQDKYNPVNRREFQEERNQLAQNRFNEFLKQYNMG 148  Paramecium te...
XP_003293253  166 KQFLDYQD-DQITAADADKKYEEYKVEYSKRQSRVFFKEHQNEEWFKEKYDPVFLAKKRKEKVEKSKSLVSTFSLNLNDE 244 
8PMP_D         85 WFDNLLLDiDKADAIVKM-LDAAVIKMEGGTE 115  human
XP_002140670  137 ELNNIDRSvDKLE------FSSVQIIHNNTCA 162 
Q5CXB1        132 GFSTVNKTnNDVE------KIGCEITITDTSH 157  Cryptosporidium parvum
XP_002114974  232 RLSDVPLHhDNTMNVTRI-LDEFVIRLEGGTD 262 
1_pfamImport   80 SLDGFTLDyGSAEAIIRM-MDSVVVKLENGTE 110 
Q966L5        167 QFNKFSLDfGDAEAIIRM-LDSVVVKLENGTE 197  Caenorhabditis elegans
XP_032218971  237 LSKDLRLEvDHSDAIVKF-LDAVVIKLEGGSD 267 
XP_020432256  299 NFNFNLTAkDNIKDSEKL-VNSEGMEIEHDDT 329 
A0E2A3        149 GFNNINLTmTEMQL-----MDFFELNDHFYND 175  Paramecium tetraurelia
XP_003293253  245 NHKFSLESkDNIKEGDKLdLDGLDMHHHEPTE 276 
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