Conserved Protein Domain Family
NB-LRR

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pfam12061: NB-LRR 
Late blight resistance protein R1
R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain. This protein is found associated with PF00931.
Statistics
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PSSM-Id: 403325
View PSSM: pfam12061
Aligned: 34 rows
Threshold Bit Score: 337.385
Threshold Setting Gi: 698532283
Created: 11-May-2020
Updated: 7-Aug-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
XP_016484143   88 QNKIWLIKMEIR-AKYSFPKISSLPLISAKKNgsDIPKFVMDFMDTVVEILRDLVD-DPCSSLLYVPET--NEHVEDVLK 163  common tobacco
XP_016448092  257 QNEFWQTKLEIR-AKYSFPEISFQLLANNDGT--VTPNSVMEFIDTVIENLNDLLKlDDSSSPLHVEGL--VDQVEKVLK 331  common tobacco
XP_009763714  236 QNKLWQTKLEIRkAKYSFYEVSFQLFDHNDT---IIPDFVLEFIDTVIENLSDLLKlDDPSSLLQVGGL--VDQVEKVLK 310  wood tobacco
PHU05239       97 QNNIWLSKLEIR-DNYPFLKMAFSSKKENSSSnaASPDFLEKFIDIVLRNLSDLLKiYAPTSLLFVPGP--KKQMEEVVN 173  Capsicum chin...
PHU02420       47 EERIWEIKLEIR-DEYSFPEASQPLPSNV-----AIPEFVKRFIDNVVMNLSDLLViRHPFYWSWLVPDssRQQMEEVVK 120  Capsicum chin...
XP_015168328   99 EEHICETKLEIR-DKYSFPEAS-LPLSSIV----ATPEFAKKFIDTVVRNLTDLSEiCHPYIDIVPHSS--KQPMEEVVK 170  potato
PHU02416      700 KEQIWEIKLEIR-AKYSFPEASVPLPSNV-----ATPEFVKRFIDTVVMNLSDLTEmYDFYSWFTIVPHssTQQMEEVVK 773  Capsicum chin...
XP_004239469   90 EEEIWETKIHIE-AKYSFPIALISKIAT------LDPEFVKRFIDTVIMNITDLPKiNRLYTWSR------LKQIQEAVK 156  tomato
PHU05644       89 QNKIWTAKLEIR-GECFVPRMSFHELSSNKRGvaTSPIFVMEFIDSVVENLGDIGKiSDSH----------SSQVEEVLR 157  Capsicum chin...
XP_006363255  114 QNKIRVTKMEIR-ANYSFFSGISLKLPSLEKSgvDNSKFVMKFINGVVQNLHELAEiDDLC----------SREIQEVLK 182  potato
XP_016484143  164 ELKLLRTFVCFVS-ERFIEPq-sQHLANFFTHVLAVAGHASMLVWLYFSSY----GYEDR-DVAvlgEINVFL--FLQMK 234  common tobacco
XP_016448092  332 ELKFLFSFVSFVS-DRCVEP---EVQRTFFTHVLEVAWLTIVVTWLYLPSHaggcPDPDS-TPA---EGYPLFsdLLRSK 403  common tobacco
XP_009763714  311 ELKFLRSFVSFVA-DRSVEP-------HVFFHALEVAWHTTVVTWLYLPSK------EHM-YSAa-dEGYPLFfdLLRKK 374  wood tobacco
PHU05239      174 ELKLLRNFVFYVS-NRCTKP---QNLRTFFTHVLLVVGHAAMDAWLYFPGI----DGNKDlASN---EMDVLG--LLQMR 240  Capsicum chin...
PHU02420      121 ELKLLRNFVYFIS-DRCTDP---QSQHTFFTHVLVVAGHAAMISWVNLPNL----KSKDI-KVAs-aKMNASFs-dLQMK 189  Capsicum chin...
XP_015168328  171 ELKLLRNFVYFISdRICSDEsdpQSQHTFLTHVLVVAGHAAMISWLNLPNHw---KEKNL-ASA---KMNASFs-dFQKR 242  potato
PHU02416      774 ELKLLRNFVYFVS-DRCTDL---QSQQTFFTHVLVVAGHAAMVSWLNLPND----RSEEG-LVSa--RMNASFs-dLRMR 841  Capsicum chin...
XP_004239469  157 ELKLLRNFVYFIS-DRCTNP---QSQYTFFSHVLVVAGHVAMISWFSINAD------MNF-FFDp-lKLDALFs-dLQMR 223  tomato
PHU05644      158 ELNLLKSFVCFVS-NRCIGS---QSQVDFFTHVLVLAGHVAIIPWLYLPCH----ANGDQ-DLDl-dEVNVLLteLLRKR 227  Capsicum chin...
XP_006363255  183 ELKLLKSLVGFLSnRWCAEP---QSVRTFFGHVLVVAGFAAMVVWLCMPSYdn-nRDQDL-VPG---EMNFLLsyLVRMR 254  potato
XP_016484143  235 FKPIQPSIRKIYIALLEVLKSRIQSgWCPNIQnHEHAADSEANFLETIQQDLAEL-PTNSNFSqsdALKDqlvILKEMLD 313  common tobacco
XP_016448092  404 IQPIEPSISKIYIDVLKAIKLQQSQ-WYPVIQ-IKYVVDCEVGFVETLLHNLEEL-PFILSGL----------EIKEMLN 470  common tobacco
XP_009763714  375 IQLNEPSISEIYIEVLQAIKLEQSh-WYPVIQ-IKYAVDCEVGFLETLLHILEEL-PISGDCIak------kaTLQEMLN 445  wood tobacco
PHU05239      241 TCPIQPFVCDIYTDVLQALKSEQTg-WDRNIQ-IEYTADCEVGFVETLIHYLSEL-PIIGMHKdtcSLKDqkaILQEMLN 317  Capsicum chin...
PHU02420      190 IQPIQPCVRKIYIDVLQALESg----WHPNIQ-AEDAAAYKAGFVETLVHFLEEL-PITFKDH------------MAMLN 251  Capsicum chin...
XP_015168328  243 IQPIQPCIRKIYVDVLQALKSg----CHPNIE-AEYVSDYKYGFVETLVHRLKVL-PVTFKDQ------------MPMLN 304  potato
PHU02416      842 IQPIQPCICKIYIDVLQALKSg----CHQNIQ-AEYVADYKAGFVETLVHHLEVL-PITDKHKkvvAFKD----RNTMLN 911  Capsicum chin...
XP_004239469  224 IQPIQPGIHEIYIDVLQALKSg----SHPNi--DVHAADYKAGFVETLVHHMEVLrPIIHKHEkgvAFKD----QITMLN 293  tomato
PHU05644      228 IKPIQPCVRKIYVEVLQALKSTHSR-WFPVVP-MEYIAECEASFVKILLHNLEEV-SNVSTSSrvvALKDqmaTLSEMLN 304  Capsicum chin...
XP_006363255  255 IKPVNPCIHKIYVDVLQALKWKMQSnLSMNIQ-NVYVAEIEAGFVETLMHNLEEI-RSISTLSrieFLNHqmaTLVEMLK 332  potato
XP_016484143  314 ILRADIIHVPIRDLEVLLRDIDTFIIDVGLVVY-SLYKGeeEEKEVVAVGEVNPALVLD-LLGNIQKiIITEKLMPIRKA 391  common tobacco
XP_016448092  471 FLRARL---LIQVSEFYLQDIDSVIVDAGILVY-SLNIK--------------EKGDLD-FRVKVQN-LQAMIYLIARKT 530  common tobacco
XP_009763714  446 FLRTNLKDLPTTALEFHLQHIDSVIVDAGILVYsVIFDA----GLPVYSVNKKEKDDLN-FRVKIQN-LQAMIYPVARKT 519  wood tobacco
PHU05239      318 LLRANLISLPIKDHKCHLQDIDAAIIDAGLLVY-SLYSSm-KEKEDMAVEESNHVPMLD-FSGIVQS-IQTVTYLITRKS 393  Capsicum chin...
PHU02420      252 YLKANLINLPREA----LKDLDAAIIDAGLLVY-SLYGSv-EEKEEMVVVELNQVPVLD-LSSDIQS-IQALIYLITRKS 323  Capsicum chin...
XP_015168328  305 FLRDNLINLPREA----FKDLDTAIIDAGLLVY-SLYDRv-EEKEDVAVGESNQVPVLD-FSGDIPS-IQALIYLISRKS 376  potato
PHU02416      912 FLRANLINLPRET----LEDFDTALINIGLLVY-------------------------SsFSGDIQT-MKALIYFLTRKS 961  Capsicum chin...
XP_004239469  294 FLRDNLINLPREA----VEDFDTGIINVGLLVY-SVFKS-------VALGKSKRLVPVLdFSGDIQS-IQALVYFLTRNS 360  tomato
PHU05644      305 LLRANLIPLPTQDLIFHVEDIDTVIVDVGLLVY-SLYDNe-EEKEDVTFEEKNEAPVLD-FQSNIQR-IKSVIYLIIRKA 380  Capsicum chin...
XP_006363255  333 FLRASLIHLPTLGLEFHLKDIDTVIIDVGLLVY-SLYDS-------KEQEEVNQRLFID-LPKSIQH-IKEVIFLVSRKA 402  potato
XP_016484143  392 F 392  common tobacco
XP_016448092  531 F 531  common tobacco
XP_009763714  520 F 520  wood tobacco
PHU05239      394 F 394  Capsicum chinense
PHU02420      324 F 324  Capsicum chinense
XP_015168328  377 F 377  potato
PHU02416      962 F 962  Capsicum chinense
XP_004239469  361 F 361  tomato
PHU05644      381 L 381  Capsicum chinense
XP_006363255  403 F 403  potato
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