Conserved Protein Domain Family
BAF250_C

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pfam12031: BAF250_C (This model is not part of the current CDD release)
SWI/SNF-like complex subunit BAF250/Osa
This entry represents the mammalian BAF250a/b and its homologue osa from fruit flies. They are part of the SWI/SNF-like ATP-dependent chromatin remodelling complex that regulates gene expression through regulating nucleosome remodelling. In humans there are two BAF250 isoforms, BAF250a/ARID1a and BAF250b/ARID1b. BAF250a/b may be E3 ubiquitin ligases that target histone H2B.
Statistics
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PSSM-Id: 520037
Aligned: 12 rows
Threshold Bit Score: 355.564
Created: 15-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
XP_022528925 1927 SLSKRCICVSNIIRSLSFIPGNDTEMSRHPGLVLVLGRLLLLHHEHPERKR-------SVPTY---EKE----------- 1985
1_pfamImport    1 DLAQRALALSNILRGFSFVPGSDLMMAKNEALLYIIGRFLRLNVTERKISSkrpvvvlDAEEL---KKEikkvsadekkv 77  
EDO30702      286 AISRRCICVSNILRGLSFVPGNDIEMHRHAGLLLILGRLLLLYHEHAHRVP-------YKRTYlqvDEEpdv-------- 350 
EDX15823      227 SLARRCIALSNIFRNLTFVPGNETVLAKSTRFLAVLGRLLLLNHEHLRRTP-------KTRNY---DRE----------- 285 
3_pfamImport    1 NIGKRCVCISNILRSLTFIPGNESEFSRSSTFLAIVGKLLLLHHEHPPRTQ-------KTRNY---DRE----------- 59  
2_pfamImport    1 SIGKRCVCISNILRNLSFVPGNELEFAKSGPFLGLVGKLLLTHHEHPLRSS-------KTRNY---DKA----------- 59  
XP_046449992 1627 ALARRALALSNIFRSLSFVPSNETELAKNSTLLVIVGKILLLHHDHPLRSS-------HQKNY---DRE----------- 1685
EFP12504     1236 DLAHRALALSNILRGFSFVPGSDHLMAKNEALLFIIGRFMRLNVNERKISTkrpgavlNLEEL---KKDpksltedekra 1312
XP_014326952 1972 SLARRCICVSNIIRSLSFVPGNDLEMSKHPGLLLLLGRLVLLHHRHPERKQ-------APVTY---EKE----------- 2030
NP_001367394 1183 ELAHRALALSNILRGFSFVAGSDVLMARNEALLFIIGRLLKLNVKEHKISSkrpgivmSAEEL---KTApkqlsadekra 1259 Caenorhabditi...
XP_047275112  974 SLAKRCICVSNIVRSLSFVPGNDAEMSKHPGLVLILGKLILLHHEHPERKR-------APQTY---EKE----------- 1032 human
XP_029681884 2000 SLAKRCLCISNIVRNLSFIPGNDLDISRHPALVLLLGKLLLLHHQHPERNR-------TPPNL---QRD----------- 2058 torafugu
XP_022528925 1986 --KEefpkEEQgla------------csRDEWWWDCLTALRENAMVTLANIAGQLDLSVYPESICLPILDGLLHWMVCPS 2051
1_pfamImport   78 rdKAvlddVDA-----------------TATQMIDTTNQLRDDAFVMLTHMSVSLNIYDLPDSIAFPIYDGLLRWAVSRV 140 
EDO30702      351 pvDD------------------------RDDWWWHCLEVLRENALVILSNIAGQLDLTFYSDTIRASVLEGLLHWLVCES 406 
EDX15823      286 --ED----TDFsdscs--------slqgEREWWWDYLITIRENMLVAMANIAGHLELSRYDELIARPLIDGLLHWAVCPS 351 
3_pfamImport   60 --ED----ADFadscs--------slqgESEWWWDFLIQIRENILVSIANISGQIDFNVYPEEIVRPILDGLLHWAICPS 125 
2_pfamImport   60 --DDd---TESlfncttttdadtiepgnDAKWWWDYLDVVRENLLVSLANIAGYVDLSTFNEDISRPILDGLLHWAICPA 134 
XP_046449992 1686 --ED----VDFasvdslga-sgsasskcETDWWWDTLLALRENVLVLMSNIAGQLDLSIYSEEIVRPVIDGLLHWAICPS 1758
EFP12504     1313 keRSildeADV-----------------TTAQMVETANTLRDDAFVMLTHMSVSLNLYELPDAIAYPIYDGLLRWAVSRV 1375
XP_014326952 2031 --EE----EDEgvs------------cdRDEWWWDCLEVLRENCLVTLANISGQLDLSIYPESICLPLLDGLLHWAVCPS 2092
NP_001367394 1260 keKSvldeVDA-----------------TTAQMVETANQLRDDAFVMLTHMSVSLNLVDLPDAIAYPIYDGLLRWSVSRV 1322 Caenorhabditi...
XP_047275112 1033 --ED----EDKgva------------csKDEWWWDCLEVLRDNTLVTLANISGQLDLSAYTESICLPILDGLLHWMVCPS 1094 human
XP_029681884 2059 --EQ----RERgls------------ssKEEWWWECLSVLRENAMVTLANISGQLDLSNYPDTICLPILNGLLHWMVCPS 2120 torafugu
XP_022528925 2052 AEAQDPFPSag--shSQLSPRRLVLECLCKLSVQDGNVDLILATPPFTRQEKLFATLVRQLGERKQQVYREMAVVILSCL 2129
1_pfamImport  141 PEATDSTTP------APVSPRDYALEIMCKLVVIERNVDMLLSTGSWSRIEQFVHILSRLLTMNEETHFREFAIVILNAF 214 
EDO30702      407 ADALDPMPTat--psTSLSAQQLVLEALAKMSILGGNAELIISTSSSPQLVLIHDTLVRLLGSRGNPVCRELTLVLLSNL 484 
EDX15823      352 AHGQDPFPScg--pnSVLSPQRLALEALCKLCVTDANVDLVIATPPFSRLEKLCAVLTRHLCRNEDQVLREFSVNLLHYL 429 
3_pfamImport  126 ATGQDPFASvg--psSLLSPQRLALESLCKLCVTNNNVDLVIATPPFSRLERLCAVLTKHLCRSEDQVLREFSINLLHYL 203 
2_pfamImport  135 AAGQDPFPS------APLSPQRLALESLCKLCVTDNNVDLVIATPPYSRLEKLANVLTRLLCRTEEQVLREFAVNLLHYL 208 
XP_046449992 1759 AQSQDPFSSfgphstSLLSPQRLSLETLSKLMVMDCNMDLILATPPFLRLEKLVHFLTRSLCRTEDQVLREFAVNLLYYL 1838
EFP12504     1376 PEATDSTIP------APVSPRDYSLEIMCKMVVIERNVDMFLSTGSWSRVEQFVHILSRLLTMNEETHYREFAIVILNAL 1449
XP_014326952 2093 AEALDPFPTlg--phSSLSPQRLVLETLSKLSIQDNNVDLILATPPFSRLEKLYGSLVRLVGERKVAVCREMAVVLLANL 2170
NP_001367394 1323 PEATDSSIP------CPVSPRDYSLEIMCKMVVIERNVDMFLSTGSWSRVEQFVHILTRLLTMNEETHYREFAIVILNAL 1396 Caenorhabditi...
XP_047275112 1095 AEAQDPFPTvg--pnSVLSPQRLVLETLCKLSIQDNNVDLILATPPFSRQEKFYATLVRYVGDRKNPVCREMSMALLSNL 1172 human
XP_029681884 2121 AEAQDPFPSaa--phSQLTPQRLVLECLCKLSILGDNVDLLLATPPFSRQEKLFTILVRYVGQRKAQVYREMAVAVLSHL 2198 torafugu
XP_022528925 2130 ARGDCSAARGIAVQRSSIGNLIGFLEDGIAMTQYHQNPHSLIHIG--HSPMDQPSVNMM 2186
1_pfamImport  215 CVASEAICCICAMETQAISHLILFIDAADQSMHQVMQTLGMNALRd-NPELMGTSVGML 272 
EDO30702      485 SQSDNEFAN-LGDKKQCIAMLLQFIEDAANSINAYSSGSSLAQGGytSEDFCGTSVDML 542 
EDX15823      430 AAADSAMARTVALQSPCISYLVAFIEQAEQTALGVANQHGINYLRe-NPDSMGTSLDML 487 
3_pfamImport  204 AAADSSMARTVASQTPCVSLLVAFIEQAEQSALGVANQHGIGALRd-NPDSMGTSLDML 261 
2_pfamImport  209 AAADSGMARTIALQSPCVSLLVAFIEQTEQNALSVVNTHGLNALRd-NPDSMGTSLDML 266 
XP_046449992 1839 SAADSGMARLIALHNNSLALLVSFVEQAEANALAVASQHGIQALRe-NPESMGTSLDML 1896
EFP12504     1450 CIASEAVCFICAMETTTISNLILFVDSADQNMHQVMQAHGMNALRd-NPELMGTSVGML 1507
XP_014326952 2171 AQGDSLAARAIAVQKGSVGNLLGFLEDSLAATQYQQSQSSLLQMQg-SPHFEPTSVDMM 2228
NP_001367394 1397 CIASEAVCYICAMETSAIAHLILFIDSADQNMHQVMQAHGMAALRd-NPELMGTSVGML 1454 Caenorhabditis elegans
XP_047275112 1173 AQGDALAARAIAVQKGSIGNLISFLEDGVTMAQYQQSQHNLMHMQ--PPPLEPPSVDMM 1229 human
XP_029681884 2199 AQGDPTAARAIAMQKSCVGNLVGFLEDGVSMAQYQQNPHSLLHMG--HPPMDPPSINMM 2255 torafugu
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