Conserved Protein Domain Family
COG2_C

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pfam12022: COG2_C (This model is not part of the current CDD release)
COG complex component, COG2, C-terminal
The COG complex comprises eight proteins (COG1-8) and plays critical roles in Golgi structure and function. It is necessary for retrograde trafficking in the Golgi apparatus and for protein glycosylation. COG complex, together with exocyst, Golgi-associated retrograde protein (GARP) and Dsl1 complexes, is a member of the CATHR (complexes associated with tethering containing helical rods) family sharing an evolutionary origin and structural features. This domain represents the C-terminal of COG complex subunit 2 and consists of a conserved alpha-helical bundle. In Arabidopsis, COG2 forms a complex with FPP3/VETH1 and FPP2/VETH2 and ensures the correct secondary cell wall (SCW) deposition pattern by recruiting exocyst components to cortical microtubules in xylem cells during secondary cell wall deposition.
Statistics
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PSSM-Id: 520030
Aligned: 68 rows
Threshold Bit Score: 192.564
Created: 15-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
XP_001469985 577 NVY-------AALRvsevdkaVQSVTSPLDRLpaatnsq------------------yqlrlfYIAHQQLLHLFSSSVFS 631 
Q21444       355 LVY-------FKLE-------THRFGKQCDQLmspemfaepetse-----nrentpqlhcgvsRAIITAIEHVWSDDVYL 415  Caenorhabditis...
4_pfamImport   6 LVY-------FKLE-------THRFGKEIDKLmlpeqfeivagd-------deeeedlhcktsRAVISAIEHIWSDDVYI 64  
XP_002632392 354 LVY-------FKLE-------THKFNKKIDQLllpekfevcdk---------idgedfhfetsKSIFAAIEHVWSDGVYL 410 
2_pfamImport   6 TVY-------FKLE-------TQRFGKKIEQLlipekfesnehe--------nndeelyfetsRTIFAAIEHVWSDEVYL 63  
XP_002178952 512 DVYtgtpetlLRLRnesgf---------------------------------------elslfLELADVLLFLWRPNVIL 552 
XP_002999266 412 DVY-------FQLR-------ASQLASSLEKSfgvkrdepatpdslnrtansvdtsalvfensKRLWQVSQDCWSERIFL 477 
XP_004350660 456 AVY-------FQLC-------FSNIASSFETQlsqhplndfistih---lnpiekndyyipqsFSLCQNLDQCWSKNIFI 518 
KAF8370367   357 QVY-------FLQV-------ASAPWKKLQELadpskfslaegeq------edeetrlnsqffFQAAETIKGLWHEDRFL 416  Pristionchus p...
XP_001569248 581 NVY-------AALRvsevdkaLQSVSSSLDRLpaaansh------------------yhfrlfYIAQQQLLHLFSSSVFL 635  Leishmania bra...
XP_001469985 632 LLCTPWFLRQTVVccyrVLT-----RVQEAVAAATPAPSggasaedr--------------qtsttaseNGSTPAAGAHG 692 
Q21444       416 PPIVDKLWDFTLK----LLLkh-fsWSQTMKNYFM--------------------------------------EEKRDWT 452  Caenorhabditis...
4_pfamImport  65 AQIVDKLWDFTLR----LVLky-hsWTKTMQKYLV--------------------------------------EEKRGWE 101 
XP_002632392 411 EPIVDKLWDFTLR----MLLkh-ysWSQSIKNYLV--------------------------------------EEKRDWM 447 
2_pfamImport  64 APIVDKLWDFTLR----MLLkh-ysWSEAMRSYFI--------------------------------------EQKKDWT 100 
XP_002178952 553 QPLTNRFLRGAVQ----LIGrt-vsFIGDSMDGQIKFGEelveaepssange-----anggtppmthptRRPYCWGESEQ 622 
XP_002999266 478 APLLPNFCKLCVQ----LFTyyidiWKEPLLNTVAMINTgnkv-----------------------dfaTVPLYFLTTDE 530 
XP_004350660 519 YELSSKFFKMFLQ----MIAry-eyNIQDLITPLLNTLKkegeeekkdntntstttnttitttpsatttTRPAKQVPIQE 593 
KAF8370367   417 LPLAGKCWEQTTK----IILlc-vnYAKAMIDSVT----------------------------------SSDSSSPSFLS 457  Pristionchus p...
XP_001569248 636 LLCTPLFLRQTVVccyrVLM-----RVQEAVLKTTPTHSdptaeekr--------------ltdapeseSSSPPAEGTHE 696  Leishmania bra...
XP_001469985 693 TLLVAIADAHTLSSfltgqlrhvilgrlaaeSGQELAamASVTATTATTPAPERSTadl--vtEVLQFASASVCGqFVQR 770 
Q21444       453 SMVTLRSDTGNLHQ-----------------LVFDFAl-ESIWGKFH-DITVDTAPf-----gQCLTKHGRSIDS-LCVQ 507  Caenorhabditis...
4_pfamImport 102 DVLHLRTDAEKLHQ-----------------QIFDFAl-ETIWGKLK-DLSVDTSQf-----gQCLTKHGNSVDT-LCHE 156 
XP_002632392 448 LMLLLRSDTEKLHQ-----------------AVFDHAl-ETMWGKLH-DLSVDTAPf-----gQCLTKHGRAVDT-FCEQ 502 
2_pfamImport 101 LMLLLHSDAGKLHQ-----------------SVFDFAl-ETIWGKLH-DLSVETAPf-----gQCLTKHGRAVDS-LCHK 155 
XP_002178952 623 DVAAVAWELTILES-----------------MIQHDYvdTICGATTGGEAVLTDTEegsqlvsEVLNEASGQIKTlVDKA 685 
XP_002999266 531 DLLFAGSDFHVLFK-----------------KISQDLl-AIVKTHVDGFTDDSEVFv-----tELFQEPLASLAE-LEAS 586 
XP_004350660 594 SLVYLYSDLLKLSS-----------------KISVHYk-SVVLNTIR-NPSKEIEDiv----sNGIKDATQSIQK-LLSS 649 
KAF8370367   458 TLCSLQVDCTRMGA-----------------IVFDHAl-LSIWPRLR-ELGVDTSTf-----gQTLNAFIASMKK-EAER 512  Pristionchus p...
XP_001569248 697 TLLLVISDAHTLRTfltgqlldvilgrlaarSGCALTemTSMTATTSSAPSSERTTkdl--vtDILQFASASVCSqFVQR 774  Leishmania bra...
XP_001469985 771 ARATLVHQITDAAVVPLQNIKSVRSAYSHTRKTMPSAASWYVASALQPLQKFAEDAQRSgFTGAALQDSVADMLRTVMSH 850 
Q21444       508 IDDSIIEMFSEVLHQEIAQVSDVPKQYRWTKKSPPTTHSKYVVTAIEMVENLKEKLCCE--EHPHTDEIVRKVNLSAFNY 585  Caenorhabditis...
4_pfamImport 157 MDNDMVTMFTNVLHKELGQVSDVPKQYRWTKKAPPTTNSAYVATTIEMIEQFRDRIEKE--NHPDVEKMVKSVSLSAFTH 234 
XP_002632392 503 LDADVLSFFSDALHRELSQVSDVPKQYRWTKRAPPTSHSKYTTSAIEMIKNFQEEIEKE--EHPNVEKMIKDVSHTALCY 580 
2_pfamImport 156 IDEDIVRLFADILHLELSQVSDVPKQYRWTKRAPPTSHSKYATNAVEMIYDFQSRIEKQ--EHPDVEKVIKSVSHSAFHY 233 
XP_002178952 686 WNESIVSILTTKCCGPLAAVKGVAATYRMTNRPPPTQASPFVSTILRPLNEFNIEFLNR-TPDKIGLRWKQRIVVSVSDR 764 
XP_002999266 587 CWSTAVTMVAAGCKKVLPAIRTVKGQYQMTNKPPPTAPSTYVSNIIRPMQEFLEKWGVH-FDAAKRQQLLQAIVEDVCDV 665 
XP_004350660 650 LDTIITSHFKIKCSESLLFINTLSSQYRLTNKPFPTSPSQYVSMILNPLETFLNNKAMM-IPSHIRVEWVKTILAPVSEQ 728 
KAF8370367   513 VRSSMVDSLTRELDTMMNGVSQLPKQYRWTKKPSPTSASSYISSVVSRVDEAVKEAKEKg--VEGAEEMGREAIERSAQG 590  Pristionchus p...
XP_001569248 775 MSEALVRQITDAVVVPLQNLKSVRSMYSHTRKTMPSAPSWYVAPALHPLQKFAEEALRSgFNETALQDSVAEMLRAVIAH 854  Leishmania bra...
XP_001469985 851 FVALARETLLTAKKTEESW--EKLRRRKEgasvlqttevtpdnseevsggavsTVGGQRVTMETATDRDKMTIQLWMDA 927 
Q21444       586 FVGKGNEVLDSVEATGSSL--SRFKRKTT-----------------------------TDSGSTVTDDDKIKQQIYHDA 633  Caenorhabditis ...
4_pfamImport 235 FAVKAKEVQDGVEATGSSL--SRFKRKNT-----------------------------PENGATVSDDDKIKRQIHHDA 282 
XP_002632392 581 FVGKAKEVQDGVEATGSSL--SRFKRKTT-----------------------------PESGASVSDDDKIKCQIYHDA 628 
2_pfamImport 234 FIGKAKEVQDGVEATGSSL--SRFKKKAT-----------------------------PDVGSAVTDDDKIKQQIYHDA 281 
XP_002178952 765 YAAAVEELIATVQRTEVALqnRGTRRRAA---------------------------------GGMSDGEKVKLQLLLDY 810 
XP_002999266 666 YSSLSSELLRSALELEESLksRKLQRHSG--------------------------SSSTLTNNAVSDTEKMRMQLLLDL 718 
XP_004350660 729 FLANANETLSSVTKLNETL--RRMKGKKT----------------------------DSAPAAAESNVEKLSLQFYLDV 777 
KAF8370367   591 LIVKAQQVLETVNATGVSL--SRLKRREG---------------------------AAGSG-EGETDEEKIRMQMGLDL 639  Pristionchus pa...
XP_001569248 855 FVALARETLLTAKKTEESW--EKLRRRKEgslmsqvaeatpgsseeasagavsAVGGQRVTMETATDRDKMTIQLWMDA 931  Leishmania braz...
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