Conserved Protein Domain Family
Ribosomal_S4Pg

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pfam11993: Ribosomal_S4Pg 
Ribosomal S4P (gammaproteobacterial)
This family of proteins are ribosomal SSU S4 p proteins. This protein is found in gamma-proteobacteria. Proteins in this family are typically between 162 to 178 amino acids in length.
Statistics
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PSSM-Id: 403270
View PSSM: pfam11993
Aligned: 16 rows
Threshold Bit Score: 165.955
Threshold Setting Gi: 500024734
Created: 21-May-2020
Updated: 7-Aug-2020
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q8EE88          1 MQIDVP----LINEAQIGTRLNAAIEHNRRGEFALLLSLLSADARDMAQFQWQK----ELDAAEK-LQRQFELPPKQTLV 71  Shewanella one...
Q12MN1          1 MQIEFP----LVNESQCGNRLNQAIEHHRRGEFGLILAMLSADARDQAQFQIDS----DLSQAEK-LTKQFEIPKPQALI 71  Shewanella den...
Q082T9          1 MQIEST----LVNELQIGSRLNVAIENNRRGEFGLLLAMLSIDARDMAQFQLDN----DVESTQK-LRQRFSVPQPQLLV 71  Shewanella fri...
WP_011759936    1 MQIAAG----LVNESQVGDRLARAVEEGRRGDFGLILAMLSQDARDFAEFCLSG----D-ESVEQkLQKHFELPPQQPLV 71  Shewanella ama...
jgi:Shew_2059   1 mrTSQL----IINENQLGTRLNQAIVDHRRGEFGLLLAMLSNDARDMAQFNLEQ----TPSDLEAkLKRQFELPDAQPLT 72  Shewanella loi...
Q3IKI3          1 MQIGDL----LITESQLNTRLNKSVHEKRRGEFALLLAMLSHDALDFSQFHLPKteieDSTVGEDtLRKQIGAGPKQLLA 76  Pseudoalteromo...
Q87MW2          1 MQIHTLdkaaIINEIQFGNGINHAVHEGRRADFSLILSMFSNDVRDVVPVEEIK----ETATSDEiLRQQFGLSQPQALR 76  Vibrio parahae...
Q5E6D1          1 MKVHTLdkaeLISEVQFGSNLNHAVEAGRRADFALMMSLLSNDLRENTPVEKIN----EKKVTEDlLRQRFQLADAQTLR 76  Aliivibrio fis...
Q6LT60          1 MQVHTLdkaqLINEVQLGNQLNHAVEGGRRADFALMLAFLSPDHLETTPVDPAP----ASEQTEAdLRAYFELPEPQPLT 76  Photobacterium...
BAJ02299        1 MQPSSV----LVNESQLGTRLNHAIDNGRRGEFALLLALLSTDARDMAQFQTDQ----PANNSDKrLRKKFDIANPQQLV 72  Shewanella vio...
Q8EE88         72 ADLSSDNHITDNSAVFMQQGARA----FQLQQALRPEALVirgNEPIAM-AEALSNCELTTRLR-------QRGQLPSPQ 139 Shewanella one...
Q12MN1         72 ADLSTTEPLTDNAQVYYQQGLRG----FQLAQALTPEALVirgHTSDDM-ALALSNCDPLTRLRq------DNAIPKLPD 140 Shewanella den...
Q082T9         72 DDISVHPDTIDNAMIFQQQGARQ----FQLQQALTPEALVirgSQSDSM-VEVLSNCDYLTKNKa------INAYQQHTP 140 Shewanella fri...
WP_011759936   72 AKPGA-EDCMDNSGVFRTFGKKA----FHLSQALLPEPVVirgDLPADM-LIALNNCSHTVQRRy-----ySDARPALPt 140 Shewanella ama...
jgi:Shew_2059  73 SALHLGED-RDNSEQFHQAGLCG----FHLQQYLNPEPLVhrgRDPLAM-QEVLANCDPVTLARf-----hNELDADAPV 141 Shewanella loi...
Q3IKI3         77 PDKFDILIGQFNASLLMQAGERAgmsdIKLNHCLNPEPLFi-rDDVSHIpLQVRDNCELAVRRRin----nTQTQLSNPQ 151 Pseudoalteromo...
Q87MW2         77 SDSSSYELAALQAKQFHNAGLPS----AKLSHYLKPDALTylpEDTFDLpEDVYHNLSGHERRTl--------GERNKSL 144 Vibrio parahae...
Q5E6D1         77 SNEESYSRSAAQAYQFHNGGMAS----AKLQHGLAPDAMAympQDTCDLpEEIYHNLSGHQRRQl-------ESGNEIFN 145 Aliivibrio fis...
Q6LT60         77 STEYCYGRAAAQADAFHKGGLSS----SQFLHDLKPTALTfppLGTKGMpEELYHNLSGHERRKl--------PPTEDAT 144 Photobacterium...
BAJ02299       73 TDLSVNNSPIEHSRVFREGGARA----FQLAQAIQAEALVtrgSEPAEM-LEVLINCDLLTREKftrsksnQAGYDDSRD 147 Shewanella vio...
Q8EE88        140 Ve--iMHFADQLAIQRHL 155 Shewanella oneidensis
Q12MN1        141 Fn--qMHFIDQLAIQRQI 156 Shewanella denitrificans OS217
Q082T9        141 Le--dMHFLEQLSTQRKI 156 Shewanella frigidimarina NCIMB 400
WP_011759936  141 ----hQHFNDILEAQRAL 154 Shewanella amazonensis
jgi:Shew_2059 142 Me--lPHFTEQIVRQRAL 157 Shewanella loihica PV-4
Q3IKI3        152 Ld--aAAFYESLNNDALH 167 Pseudoalteromonas haloplanktis TAC125
Q87MW2        145 Ip--dAGLYNQLVTAQRQ 160 Vibrio parahaemolyticus
Q5E6D1        146 Ai--pQDLYNELVTAKRH 161 Aliivibrio fischeri ES114
Q6LT60        145 IqaspQDLYLSLIQSKRY 162 Photobacterium profundum
BAJ02299      148 Ld--pPNFVDILSQQRQM 163 Shewanella violacea DSS12
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