Conserved Protein Domain Family
Ribosomal_S4Pg

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pfam11993: Ribosomal_S4Pg (492283 is an unknown moldel)
Ribosomal S4P (gammaproteobacterial)
This family of proteins are ribosomal SSU S4 p proteins. This protein is found in gamma-proteobacteria. Proteins in this family are typically between 162 to 178 amino acids in length.
Statistics
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PSSM-Id: 492283
Aligned: 12 rows
Threshold Bit Score: 165.986
Created: 21-Aug-2024
Updated: 4-Dec-2024
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q8EE88         1 MQIDVP----LINEAQIGTRLNAAIEHNRRGEFALLLSLLSADARDMAQFQWQK----ELDAAEK-LQRQFELPPKQTLV 71  Shewanella onei...
1_pfamImport   1 MLPSAIreqwLVDEAQLGQRLNQDLQHGDRADFRLHLALLTDAVEEQPWFDPRQ----PAKAESRvWRSRFELPPATPLQ 76 
Q12MN1         1 MQIEFP----LVNESQCGNRLNQAIEHHRRGEFGLILAMLSADARDQAQFQIDS----DLSQAEK-LTKQFEIPKPQALI 71  Shewanella deni...
Q082T9         1 MQIEST----LVNELQIGSRLNVAIENNRRGEFGLLLAMLSIDARDMAQFQLDN----DVESTQK-LRQRFSVPQPQLLV 71  Shewanella frig...
WP_011759936   1 MQIAAG----LVNESQVGDRLARAVEEGRRGDFGLILAMLSQDARDFAEFCLSG----D-ESVEQkLQKHFELPPQQPLV 71  Shewanella amaz...
Q3IKI3         1 MQIGDL----LITESQLNTRLNKSVHEKRRGEFALLLAMLSHDALDFSQFHLPKteieDSTVGEDtLRKQIGAGPKQLLA 76  Pseudoalteromon...
WP_013345735   1 mrPEGI----LINEWQLGSALNQAVHQGHRGEFGLLLSMMVQDVRYHGSFQLEK----TEQGEPLpLRQRFELPEPQPTI 72  Ferrimonas bale...
Q87MW2         1 MQIHTLdkaaIINEIQFGNGINHAVHEGRRADFSLILSMFSNDVRDVVPVEEIK----ETATSDEiLRQQFGLSQPQALR 76  Vibrio parahaem...
Q5E6D1         1 MKVHTLdkaeLISEVQFGSNLNHAVEAGRRADFALMMSLLSNDLRENTPVEKIN----EKKVTEDlLRQRFQLADAQTLR 76  Aliivibrio fisc...
Q6LT60         1 MQVHTLdkaqLINEVQLGNQLNHAVEGGRRADFALMLAFLSPDHLETTPVDPAP----ASEQTEAdLRAYFELPEPQPLT 76  Photobacterium ...
Q9KQF2        12 MQVHTLdkagVISELHFGQGISQAVTHGRRADFALLLALFSNDVRDNTPVDKIE----VPPTTEQvLRQRFELAEPQRLE 87  Vibrio cholerae
WP_013051603   1 MQPSSV----LVNESQLGTRLNHAIDNGRRGEFALLLALLSTDARDMAQFQTDQ----PANNSDKrLRKKFDIANPQQLV 72  Shewanella viol...
Q8EE88        72 ADLSSDNHITDNSAVFMQQGARA----FQLQQALRPEALVirgNEPIAM-AEALSNCELTTRLR-------QRGQLPSPQ 139 Shewanella onei...
1_pfamImport  77 GSANDEEAALLNERLQQGGSMVD----VRLWLALRSPPLL---GAPPALePAVYDNLSPLGRERwqgkladQPRRDDPLL 149
Q12MN1        72 ADLSTTEPLTDNAQVYYQQGLRG----FQLAQALTPEALVirgHTSDDM-ALALSNCDPLTRLRq------DNAIPKLPD 140 Shewanella deni...
Q082T9        72 DDISVHPDTIDNAMIFQQQGARQ----FQLQQALTPEALVirgSQSDSM-VEVLSNCDYLTKNKa------INAYQQHTP 140 Shewanella frig...
WP_011759936  72 AKPGA-EDCMDNSGVFRTFGKKA----FHLSQALLPEPVVirgDLPADM-LIALNNCSHTVQRRy-----ySDARPALPt 140 Shewanella amaz...
Q3IKI3        77 PDKFDILIGQFNASLLMQAGERAgmsdIKLNHCLNPEPLFi-rDDVSHIpLQVRDNCELAVRRRin----nTQTQLSNPQ 151 Pseudoalteromon...
WP_013345735  73 SRFPDIHRSEACAQAFHQGGLVQ----SRLQQCITPEPLDirgEHCHGM-SEALANAEPVSRq--------PDSLAQKLR 139 Ferrimonas bale...
Q87MW2        77 SDSSSYELAALQAKQFHNAGLPS----AKLSHYLKPDALTylpEDTFDLpEDVYHNLSGHERRTl--------GERNKSL 144 Vibrio parahaem...
Q5E6D1        77 SNEESYSRSAAQAYQFHNGGMAS----AKLQHGLAPDAMAympQDTCDLpEEIYHNLSGHQRRQl-------ESGNEIFN 145 Aliivibrio fisc...
Q6LT60        77 STEYCYGRAAAQADAFHKGGLSS----SQFLHDLKPTALTfppLGTKGMpEELYHNLSGHERRKl--------PPTEDAT 144 Photobacterium ...
Q9KQF2        88 NDESSYQISARQAALFHQGGMAS----AKLSHYLTPEVLTyrpQDTQGLpEEVYLNLSGHERRHl--------ADKQPST 155 Vibrio cholerae
WP_013051603  73 TDLSVNNSPIEHSRVFREGGARA----FQLAQAIQAEALVtrgSEPAEM-LEVLINCDLLTREKftrsksnQAGYDDSRD 147 Shewanella viol...
Q8EE88       140 Ve--iMHFADQLAIQRHL 155 Shewanella oneidensis
1_pfamImport 150 M----LPILDTLKAGVDA 163
Q12MN1       141 Fn--qMHFIDQLAIQRQI 156 Shewanella denitrificans OS217
Q082T9       141 Le--dMHFLEQLSTQRKI 156 Shewanella frigidimarina NCIMB 400
WP_011759936 141 ----hQHFNDILEAQRAL 154 Shewanella amazonensis
Q3IKI3       152 Ld--aAAFYESLNNDALH 167 Pseudoalteromonas haloplanktis TAC125
WP_013345735 140 VfpaqMALADLIAEQRLQ 157 Ferrimonas balearica
Q87MW2       145 Ip--dAGLYNQLVTAQRQ 160 Vibrio parahaemolyticus
Q5E6D1       146 Ai--pQDLYNELVTAKRH 161 Aliivibrio fischeri ES114
Q6LT60       145 IqaspQDLYLSLIQSKRY 162 Photobacterium profundum
Q9KQF2       156 Ll--aKDFYHRLATAYRQ 171 Vibrio cholerae
WP_013051603 148 Ld--pPNFVDILSQQRQM 163 Shewanella violacea
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