Conserved Protein Domain Family
PB1-F2

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pfam11986: PB1-F2 
Influenza A Proapoptotic protein
PB1-F2 is a protein found in almost all known strains of Influenza A virus - a negative sense ssRNA Orthomyxovirus. It originates from translation of the viral polymerase gene in an alternative reading frame. PB1-F2 consists of two independent structural domains, two closely neighboring short helices at the N terminus, and an extended C-terminal helix. Although the protein has originally been described to induce apoptosis, it has now been shown that PB1-F2 more likely acts as an apoptosis promoter in concert with other apoptosis-inducing agents. PB1-F2 promotes apoptosis by localising to the mitochondria where it destabilises the membrane. This will cause release of cytochrome C which activates the caspase cascade of apoptosis through the endogenous pathway. In this way it acts like the Bcl-2 protein family which are physiological apoptotic regulators in cells.
Statistics
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PSSM-Id: 288812
Aligned: 2 rows
Threshold Bit Score: 149.065
Created: 15-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
P0C791  1 MEQEQDTPWTQSTEHINIQKRGNGQRTQRLEHPNSIRLMDHYLRIMSRVGMHKQIVYWKQWLSLKNPTQGSLKTRVLKRW 80  Influenza A virus (A/g...
P0C0U1  1 MGQEQDTPWILSTGHISTQKRQDGQQTPKLEHRNSTRLMGHCQKTMNQVVMPKQIVYWKQWLSLRNPILVFLKTRVLKRW 80  Influenza A virus (A/P...
P0C791 81 KLFSKQE 87  Influenza A virus (A/goose/Guangdong/1/1996(H5N1))
P0C0U1 81 RLFSKHE 87  Influenza A virus (A/Puerto Rico/8/1934(H1N1))
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