Conserved Protein Domain Family
Phage_Mu_Gp27

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pfam11985: Phage_Mu_Gp27 
Bacteriophage Mu, Gp27
This family is represented by Bacteriophage Mu, Gp27. It is probably the small subunit of terminase, which recognises viral DNA, binding to the packaging initiation site (pac) and regulates the ATPase activity of the terminase large subunit. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Statistics
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PSSM-Id: 492276
Aligned: 41 rows
Threshold Bit Score: 110.03
Created: 15-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_015916613   9 IELLPEECGPivaWASDALQDRDRTqt-dlYKEFVSKLQaldreYRGELEiciPSFSSFNRYSVRLASMTRR----LDET 83  Rhizobium/Agrob...
WP_014703419   7 VQKLSQDDKA---WLDAELIKRGFSg----YDDLEAICR-----ERGID----ISSSSLHRYGKSFNERLDA----VKMI 66  Methylophaga fr...
Q2LQR5        11 ILDLPPDVKA---ELDRRLITGGFCd----YEGLSAWLQ-----EQGYD----ISRSGVHRYGQGFEGRLAS----IRIA 70  Syntrophus acid...
WP_012638209   7 VFELPQDVRE---ELNEKLVATGFQg----YEALAGWLA-----ERGFQ----VSRSSVQRYGSELQAEFEAamgdVRKT 70  Thioalkalivibri...
Q602X4         7 VYQLPPEVQE---ELNTRLVGSGFGg----YRDLSAWLK-----DQGYH----ISKSALHSYGQEFELEFKSsmeaAFTV 70  Methylococcus c...
BAN96596       7 IDVLPPSVRE---WLDRALTERNFSg----YRELETLLR-----DKGYS----IGRAQISRYGQKVQRRFAA----IREA 66 
Q6QIC2         7 VQRLPKAVRE---WLESALVEGNFTg----YQELEQTLR-----DKGYQ----ISKSAIHRYGQRIERRFAA----IKAS 66  Burkholderia vi...
Q7NW49         7 VEQLPQAVRD---WLDKALMDGNFSg----YQLLEGTLR-----DKGFA----ISKSAIHRYGQKIERRFAA----IKAS 66  Chromobacterium...
WP_012347277   7 IAQLPEEIRA---WLHATLVKRSFGdihgvTDQLQAMLQ-----EAGIAMy--IGKSAVGAESLKIKRAQES----IKAS 72  Leptothrix chol...
WP_014086840   7 VAQLPPEVKA---WLDTALVESNFSg----YQELEQALA-----ERGYK----VSRSALNRYGQEFEDKLAA----LRQS 66  Pseudogulbenkia...
WP_015916613  84 REIATAIAGKFDAQsSDDLTLIAAEAIKTLIFELLTSKGE-------SGIDPKGAMALANALRASTQAQTVSSDRRRKVE 156 Rhizobium/Agrob...
WP_014703419  67 TEQAKAVVDSAPDD-EGAVNEALMRLVQEKLFNLVIDAei------dTSKLD--LAKVAKAIADLGRASVSQKRLAAEAR 137 Methylophaga fr...
Q2LQR5        71 TEQARAVSEAVGDS-EGHMNNALITLVQEKAFDVLVNLQTe-----dPQAFAKIFPKLGVMVAKLSKASVDQKKWMAESR 144 Syntrophus acid...
WP_012638209  71 TEMAKAFTEGDDDA-KGSLVDATARIVQEQLLRITIALRKae---hePEKAAKYMASVTHALADIGRMSLGQKKWAREVR 146 Thioalkalivibri...
Q602X4        71 EKLSKALVAQRDDS-EAAMLEAAAMVGQEILLKLMIALRQae---sdPTKAAKTISLATRSLADLGRMTLDQKKWQDQLR 146 Methylococcus c...
BAN96596      67 TEMARVITEGAEDD-QDKRSEAIIATIQADILTALIDVREasdeemaPAERASLLARVGKSIATLTRSSVSLKRYQAEVR 145
Q6QIC2        67 TEAARILTEGAADD-QDARSEAVIALVQTEMFESIVNLQEatdedadPGERIALLSKAAKNIATLARASVNQKKFRLEVQ 145 Burkholderia vi...
Q7NW49        67 TEAARLLTEGAADD-QDARSEAVIALVQTEMFESIVNLQEaneedikPEDRIALLSKAAKNIATLARASVNQKKFRLDEQ 145 Chromobacterium...
WP_012347277  73 TEAAKLIAESSRDD-GDARGEALMALISSDMFDCLMKAREaes-eedPIARLGMMGEAAKAATRLTEASVKQRRWRREVE 150 Leptothrix chol...
WP_014086840  67 SEQARAVVQAAPDE-EGSVNEALMRLVQDHLFKLLMSQDDky-----------dLSKVAKAVAELGRASVVQKKWQSEVR 134 Pseudogulbenkia...
WP_015916613 157 ADFKQKADkvfatvs-nqmeaqGKPDG-----QEVLRKIREDIYGIF 197 Rhizobium/Agrobacterium group
WP_014703419 138 EQARQELLqeqeq----rleelRGSDGm---sEQLEDRIRGILLGKA 177 Methylophaga frappieri
Q2LQR5       145 RKALEDAAdaa--------ektAKQEGv---sPATIEKIRRDVLMMA 180 Syntrophus aciditrophicus SB
WP_012638209 147 REVAQEAAdka--------aevAKRGGl---sAEVVNDLRRELLGIA 182 Thioalkalivibrio sulfidiphilus
Q602X4       147 KQLQEEAGakld------rleaGARAGkgkldAETLRIVRQEVYGLA 187 Methylococcus capsulatus
BAN96596     146 DKIAAQLDvlel-------evkNNDGHv---sLETVQRVRQQIYGII 182
Q6QIC2       146 ARAEAAAAavd---------kvVKSSGl---sDDAADAIRRQILGIA 180 Burkholderia virus BcepMu
Q7NW49       146 ARIEREVRakllaeqeekleelRGADGm---sEQMESRIRRILLGKE 189 Chromobacterium violaceum
WP_012347277 151 TKAKEAADava---------kiAKTGGl---qAAQVKEIREQILGIT 185 Leptothrix cholodnii
WP_014086840 135 ARAEAAAAsve---------kiARKGGl---sADSVAQLRREILGIA 169 Pseudogulbenkiania sp. NH8B
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