7NKY


Conserved Protein Domain Family
Spt5_N

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pfam11942: Spt5_N (This model is not part of the current CDD release)
Spt5 transcription elongation factor, acidic N-terminal
This is the very acidic N-terminal region of the early transcription elongation factor Spt5. The Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The actual function of this N-terminal domain is not known although it is dispensable for binding to Spt4.
Statistics
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PSSM-Id: 519978
Aligned: 80 rows
Threshold Bit Score: 35.3149
Created: 15-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
7NKY_Z        180 FLDIEAEVSDDEdeDEDEEDSELVREGfit--hgDDEDDEasaPGARRDDRLHRQLDQDL--------NKTSE--EDAQR 247  brewer's yeast
XP_003976693   76 FILDEADVDDEY--EDEEDQWEEGAEDile--keEAEVSN---IEHMALDEDHSGSRRLQ--------NLWRD--SREEA 138 
XP_023817606   77 FILDEADVDDE---DDEDDHWADEGEDile--keEAEVSN---LDRVVLEDDHSGSRRLQ--------NLWRD--SREEA 138 
EDO42384       50 FILEEADVDDE---YEDDEEAEKGYSDli------------------dTGTSHSPFERIEcrclinslLLQMFkeRKDDE 108 
XP_009021843   74 FILEEADVDDD----EDEDDIGDGESDfe---eyKNDLAM---AAQEEGPSARDIEGERR--------MN--WrnADEKN 133 
KAF8375888     86 FILDDVEVDSD---DAEEEEYESGDDTgle--pkEREEAE---KRMRQMEAERRKKEEKR----------AAFlnMPEED 147 
Q21338         82 FLAWDVEVDDE---DEDDDNDYDDEDDpsmnamnEREEAE---RAMKEMELSQRNRDRYK------------FqnMTEDE 143  Caenorhabditi...
XP_020306368   88 FILDDVEVDED---EEEEDGFEEDGDEmgi-dprEREEAE---RMMKE-QDERNREGRRR----------DLFsgMNEDQ 149 
XP_018669310   86 FILDEADVDED---GVDDEEWEDGAQDil--------dpA---STVENV-LDDDMSGARR--------LHNMFndEQVEE 142  vase tunicate
XP_018669308   86 FILDEADVDED---GVDDEEWEDGAQDil---dpDEELEA---STVENV-LDDDMSGARR--------LHNMFndEQVEE 147  vase tunicate
7NKY_Z        248 LAKELRERYGRS--SSKQYRAAAQDg-----yVPQRFLLP 280  brewer's yeast
XP_003976693  139 LGEYYMRKYAKTpgGEHYSGGSEELsd----dITQQQLLP 174 
XP_023817606  139 LGEYYMRKYAKSsaGEHYYGGTEELsd----dITQQQLLP 174 
EDO42384      109 IEEYYRKKYAE---TNDRYYSAnel----qpeVQQQSLLP 141 
XP_009021843  134 LEDYFKKKY-----SSSTALDKAVDgdpmieeITQTALLP 168 
KAF8375888    148 IEKYFEEKY-----KNSSSGGANFDdddalddISQHGLLP 182 
Q21338        144 VQKYFENKY-----KGDKNDSQYDDedsamddISKNSHLP 178  Caenorhabditis elegans
XP_020306368  150 IEDYFKKKY-----ANQSSYANVMDddaalddISRHSLLP 184 
XP_018669310  143 LGEYYRKKYAT---TSSASKSGLYGdnevsddISQQQLLP 179  vase tunicate
XP_018669308  148 LGEYYRKKYAT---TSSASKSGLYGdnevsddISQQQLLP 184  vase tunicate
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