8S9B,7DTC,7W77


Conserved Protein Domain Family
Na_trans_cytopl

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pfam11933: Na_trans_cytopl (This model is not part of the current CDD release)
Cytoplasmic domain of voltage-gated Na+ ion channel
This is a large cytoplasmic domain towards the start of voltage-dependent sodium ion channel proteins in eukaryotes. It is found closely associated with pfam06512 and pfam00520.
Statistics
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PSSM-Id: 519971
Aligned: 27 rows
Threshold Bit Score: 99.4654
Created: 15-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
8S9B_A         535 SPLSIRGSLFSA---RRSSRTS-LFSFK---GRGR------------------DIGSETEFADDEHSIFGDNEsRRGSLF 589  human
XP_002427248   472 TSLSLPGSPFNV---RRSSRGShQFTVRngtGRGRfvgpptgdrkplvlstylDAQEHLPYADDSNAVTPMSE-ENGAMV 547 
3_pfamImport     1 ASLSLPGSPFNL---RRSSRGShQFTIRn--GRGRcfppggdrk-plvlstylDAQEHLPYADDSNAVTPMSE-ENGTIV 73  
1_pfamImport     1 ASLSLPGSPFNL---RRSSRGShQFTIRn--GRGRcfvppggdrkplvlstylDAQEHLPYADDSNAVTPMSE-ENGTIV 74  
2_pfamImport     1 ASLSLPGSPFNI---RRSSRGShQFTIRn--GRGRfvppggdrk-plvlstylDAQEHLPYADDSNAVTPMSE-ENGTIV 73  
12_pfamImport    1 ASLSLPGSPFNL---RRGSRGShQFTIRn--NRSRfappggdrk-plvlstylDAQEHLPYADDSNAVTPMSE-ENGAMV 73  
NP_001153633   507 NHLSLTRGLSRTsmkPRSSRGS-IFTFR---RR--------------------DLGSEADFADDENSTAGESEsHHTSLL 562 
XP_027306182   505 TLLGISYGPNANlvkRRTSHGS-IFSFR---LRGR------------------DTGSETDFADDEISTAGENEsHRGSLL 562 
7DTC_A         550 NHLSLTRGLSRTsmkPRSSRGS-IFTFR---RR--------------------DLGSEADFADDENSTAGESEsHHTSLL 605  human
XP_040551593   502 SLLGLLYGPNANqvkRRLSHGS-VFNFQ---IPAF------------------EVDSKADSADEEAHSTGENKiQGRSMS 559  chicken
8S9B_A         590 VPH---RP-QERRSSNISQASRSPpm-lPvngkm---hsavDcngvvslvdgr-------salmlpngqlLpeviIDKAT 654  human
XP_002427248   548 VPMf-yANlGSRHSSYTSHASRMSytshG------------D----------------------------L----LGSFG 582 
3_pfamImport    74 VPVy-yANlGSRHSSYTSHASRLSytshG------------D----------------------------LafsgIRGID 112 
1_pfamImport    75 VPVy-yANlGSRHSSYTSHASRLSytshG------------D----------------------------LafpgIRGID 113 
2_pfamImport    74 VPVyyaANlGSRHSSYTSHASRLSytshA------------D----------------------------LafgnIRGID 113 
12_pfamImport   74 VPMy-pTGlTSRHSSYTSHASRISytshA------------D----------------------------L----LSGLA 108 
NP_001153633   563 VPW------PLRRTSAQGQPSPGTs--aPghalhgkknstvDcngvvsllgag------dpeatspgshlLrpvmLEH-- 626 
XP_027306182   563 IPR------SGRRPSVQSQVSHSShpttPnytqtgkrnssvDcngvvsligggtg--alnpdptspagllLppviMEKPG 634 
7DTC_A         606 VPW------PLRRTSAQGQPSPGts--aPghalhgkknstvDcngvvsllgag------dpeatspgshlLrpvmLEH-- 669  human
XP_040551593   560 VPQ------VGRRSSMPSQKSHGShpatPscmqsskwantdDcngmisvmggghgkvhgledtapsegvmLppvmEDLGK 633  chicken
8S9B_A         655 -SDDSGTTNQIH--KKrRCSS----------------------------------YLLSEDMLNDPNLRQRAMSRAS 694  human
XP_002427248   583 gNGKG-RTKESQl-RD-RNRAlrcsqrglpiteqptskfreieenedgnckekyrRQSDNPFIE-PMHNQPTVDMND 655 
3_pfamImport   113 sIGKQ-ITKQEQilRN-RNNKqtpanghvtdanqkn----yhfeasdmedpmgknKPQDNPFIELPAQQHTVVDMKD 183 
1_pfamImport   114 sIGKQ-LTKQEQilRN-RTNKqttpanghvtdtnqk----syhfetdledpmgktKQQDNPFIE-PSQQHTVVDMKD 183 
2_pfamImport   114 sIGKP-ITKQEQilRN-RNNKqttpanghltdsnqk----fyhhetdledpmgktKQQDNPFIE-PSQQHTVVDMRD 183 
12_pfamImport  109 g-GRGLPTKESKl-KSlRSSRnssttvtqqpl------------sdknclrdfnnKHQDNQFIE-PAQQQNVVDMKD 170 
NP_001153633   627 -PPDTTTPSEEPg-GPqMLTS----------------------------------QAPCVDGFEEPGARQRALSAVS 667 
XP_027306182   635 -TGDLTSPSDEAs-KKqLLMP----------------------------------HRPSVDHSDEPFQRQRAVSAVS 675 
7DTC_A         670 -PPDTTTPSEEPg-GPqMLTS----------------------------------QAPCVDGFEEPGARQRALSAVS 710  human
XP_040551593   634 -SDLPAVNDESSm-MH---LH----------------------------------PQLSVEYFNETFQRQRAASAVS 671  chicken
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