6GFM,3BQ9


Conserved Protein Domain Family
PpnN_C

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pfam11892: PpnN_C (This model is not part of the current CDD release)
Pyrimidine/purine nucleotide monophosphate nucleosidase, C-terminal
This domain is found at the C-terminal end of Pyrimidine/purine nucleotide 5'-monophosphate nucleosidase from Escherichia coli (PpnN, also known as YgdH) and similar proteins mainly found in gammaproteobacteria. PpnN is a nucleosidase that catalyzes the hydrolyzis of the N-glycosidic bond of diverse pyrimidine and purine nucleotide 5'-monophosphates. The binding of (p)ppGpp, an alarmone molecule that plays a role in the bacterial stringent response, gives rise to a large conformational change in the terminal region that leads to the exposure of the catalytic pocket. This domain shows a completely alpha-helical fold with an extension that wraps around the central domain.
Statistics
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PSSM-Id: 519945
Aligned: 48 rows
Threshold Bit Score: 175.056
Created: 15-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
6GFM_A       349 PLVKENRRDTGDAYSFNWSMRIAPDLQMPFEPSHENMANLKLYPDQPVEVLAADLRRAFSGIVAGNVKEVGIRAIEEFGP 428 Escherichia col...
Q602H2       334 DLVRQFRRHHDDAYYYNWLLHLEPAFQTPFVPSHENMAGLALHRNQPPHALAANLRRAFSGIVAGNVKADGIRRIEQEGP 413 Methylococcus c...
WP_014150221 336 QRVREFRQQREDAYYFNWALQISPEFQQPFNPTHKNMAALQLHKDQESHHLAANLRRVFSGIVSGNVKDDGIRAIEQHGH 415 Methylotuvimicr...
WP_005371227 337 RQVQAFRKAAGDAYYFNWVLHIDKVFQTPFVPTHHNMSNLALHKNQAVHVLAANLRRVFSGIVAGNVKDEGIRAVEKYGH 416 Methylomicrobiu...
CAL61852     336 VQVREFRKSKGDAYYFNWTLKIDHAFQQPFVPTHENMRNLSLHKKQENHLLAANLRRAFSGVVAGNVKDSGIRSIEKHGL 415
WP_009207423 336 KLVRNFRKQQRDAYYFNSLLRIEHDLQRPFHPSHENMRKLKLQKNQPKHTLAANLRRAFSGVVAGNVKDEGIREIEKHGS 415 Sulfuricella de...
WP_015436187 334 ADVRAYRKETQDAYYFNWSLRVEHEFQRPFRATHERMRKLSLHKNQPRHLLAANLRRAFSGVVAGNVKADGIREIEKHGS 413 Azoarcus sp. KH32C
WP_012486982 349 QKVREFRKYSDDAYYFNWQLRISHDLQQPFIPTHDNMRNLELHKNQPVNQLAANLRRAFSGIVAGNVKEDGICAIEKHGH 428 Cellvibrio japo...
Q2SP72       335 QDVTYHRKGSSDAYYYNWLLKVQPEFQHPFQPTHESMRALALHREQPIHDLAANLRRAFSGIVSGNVKEEGVQLVERLGP 414 Hahella chejuen...
WP_014704734 330 DSVQEARRQSEDAYYFNWQLYIDPMLQQPFIPTHQNMAALKLFPDMPKHELAAQLRAAFSGIVAGNVKAFGIRQVAEHGP 409 Methylophaga fr...
6GFM_A       429 YKINGDKEIMRRMDDLLQGFVAQHRMKLp--GSAYIPCYEIC 468 Escherichia coli K-12
Q602H2       414 FEIRGDRSILDPLDELLATFVAQKRMKLp--GTKYEPCYRLV 453 Methylococcus capsulatus
WP_014150221 416 FEIKGDAEIMGPVDELLSAFVKQQRMKLp--GKTYKPCYRIV 455 Methylotuvimicrobium alcaliphilum
WP_005371227 417 FEIHGDPEIMALMDTLLTSFVKQHRMKLp--GKKYVPCYRIV 456 Methylomicrobium album
CAL61852     416 FEISGDREIMEPMDALLASFVAQNRMKLp--GKTYVPCYRII 455
WP_009207423 416 FEIHGDSTIMGPMDALMSSFVAQKRMKIs--SKKYNPCYRIV 455 Sulfuricella denitrificans
WP_015436187 414 FEIQGDPEILQPMDALLASFVAQGRMKLp--GKVYNPCYRIV 453 Azoarcus sp. KH32C
WP_012486982 429 FELHGDPEIMHPVDELLESFAQQNRMKLp--GRTYIPCYKVI 468 Cellvibrio japonicus
Q2SP72       415 FEISGDKTIVGSFGSLLESFVKQQRMKLp--GSKYVPSYRIV 454 Hahella chejuensis KCTC 2396
WP_014704734 410 YQINGDPELMRAIDDLLRQFVRDKRMKLgqdASCYQPCYDII 451 Methylophaga frappieri
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