4C5F


Conserved Protein Domain Family
DUF3393

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pfam11873: DUF3393 
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Domain of unknown function (DUF3393)
This domain is functionally uncharacterized. This domain is found in bacteria. This presumed domain is typically between 188 to 206 amino acids in length. This domain is found associated with pfam01464.
Statistics
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PSSM-Id: 403168
View PSSM: pfam11873
Aligned: 27 rows
Threshold Bit Score: 160.476
Threshold Setting Gi: 123741568
Created: 21-May-2020
Updated: 7-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
4C5F_B          12 WVKDTNGFd-----------iLMGQFAHNIENIWGFKEVVIAGPKDYVKYTDQYQTRSHINFDDGTITIETIAGTE---- 76  Escherichia coli
Q5QTZ8          59 YRSNPQLLisdie----dlreALRDLRAVAEAIWGDEENTVPSSKKYVKYSDNFHAKAVVDFEQGLLTVATLHDSNdpak 134 Idiomarina lo...
WP_012071018    67 VRADIKAIk-----------aLYAELDQKVNKKWGKGNSELPEKKKYVKYTNDYQARTIVDFDKGTVRVETLTTNS---- 131 Marinomonas s...
WP_015465376    50 YKKIHKQIkkeik----sirtLYANLEGNIDKIWGKNNRQVPQRKKYVKYTENYRDRAYIDFEKGIVNIETLATDA---- 121 Psychromonas ...
Q8D3C6          28 KLINKNSLn-----------iIVKNIISDSENTWNDNKIFMIEHSKVYNYNNKNITLINIDFTFKKIVIETDFKKD---- 92  Wigglesworthi...
tigr:NAMH_1576  48 YLTHPYALakdinsfikhfdlEVKKFTKAI-SIW--KNPKKPQTKTFVKYSNSYKARAIIDFDKGYVKVETIARDY---- 120 Nautilia prof...
WP_015413342    49 YATNPEALatdik----hfssMVEKLVTSVEKVWGKENVRLPEPKSYVKYTDNYLSRASIDFDSGVITIETLATET---- 120 Pseudodesulfo...
WP_013514961    52 YATNPAALatdlk----qlkkTIEDFIKAVESVWGKQDARLPSPREYVKYTHNYLSRASVDFDQGIITVETLDQQK---- 123 Pseudodesulfo...
WP_014321437    49 YATNPAAIgndlk----sfqkLVQNFIETVTGVWGEDDVRMPAPKQYVKYTDNYLSRASVDFDTGVIVVETVADKE---- 120 Desulfovibrio...
BAM32283        52 YATDSKALmrdikeakrqyakVANDLSGNVAKQWSKEDVSLPSAESYVKYSNNYKSKATINFHSGAIRIETIDTST---- 127 Helicobacter ...
4C5F_B          77 PAAHLRRAIIKTLLMGDDPSSVDLYSDVdDITISKEPFLYGQVVDNTGQPIRWEGRASNFADYLLKNRLKSRS-NGLRi- 154 Escherichia coli
Q5QTZ8         135 TREQLKAAIVRTLLTPTDLTAVDIFTDK-EPERTGKPFLRGQVVDQDNVVVEYEWRANRFAEYLVKNQLRTRRaKNNK-- 211 Idiomarina lo...
WP_012071018   132 PLDTLKQAVTTTLLTTADPTKTDIFSSD-APDTEGVPFLYPQVMDHDGKLVQYRWRAERYSNYLVSNKLKKSS-SNDKt- 208 Marinomonas s...
WP_015465376   122 PLAHLKKTIVTTLLTPNSANDVDIFSAKnIPDLNAEPFLYQQVLDQNKQPIRWKWRAQRYAQHLIDNRLKIKT-KNGKk- 199 Psychromonas ...
Q8D3C6          93 PKNYLRQAIIIALLLNNDFSDFDQ-NNKyNILQRKEPLLYGQVVDNYGVYIRHKWRANKFANYLLKTNLKTYK-NNKKq- 169 Wigglesworthi...
tigr:NAMH_1576 121 -KKVLQNALVNTMLMPDDPRSVDLFSDK--IKLNGKPFLAGQIYDFENKLVLYRWRANRYANWLIKNRLKSYV-LNGQk- 195 Nautilia prof...
WP_015413342   121 PKKNLKNAIVTTLLTPGDPRAVDLYSAQ-TVKLGDTPFLLGEVKDQDNKDIRWAWRAEHFADYLIKNSLETK--KNGHkt 197 Pseudodesulfo...
WP_013514961   124 PLDSLRTAIVTTLLTPADPRSVDLYTAK-PVKLGDTPFLYGEVKDQQNEDIRWAWRAERFADHLIATRVATR--TVDGrt 200 Pseudodesulfo...
WP_014321437   121 PLMSLRNAIVTTLLTPGDPRAVDLYSAR-TVELGETPFLLGEVKDADGKDIRWAWRAERYADHLIKNDLRTR--EVKGrt 197 Desulfovibrio...
BAM32283       128 PTKSLEQAITNTLLLPQDPSKVDLYSAD-DFKFDGEPFLAGLIKDHDGQDILTQWRAERYAKYLVENELKTRKdSKGKl- 205 Helicobacter ...
4C5F_B         155 IYSVTINMVPNHLDKRAHK 173 Escherichia coli
Q5QTZ8         212 VYEVQIALVDEHQELRKHQ 230 Idiomarina loihiensis
WP_012071018   209 VYAVEFNLVAQHEHLRQEK 227 Marinomonas sp. MWYL1
WP_015465376   200 IYSVEFDLVKNSEEIRSYK 218 Psychromonas sp. CNPT3
Q8D3C6         170 IWSVSIPLKFNRSDKRANK 188 Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis
tigr:NAMH_1576 196 IYYVTFNLAKNSENVRAKK 214 Nautilia profundicola AmH
WP_015413342   198 VHSVSISMVRDHLDIRAKK 216 Pseudodesulfovibrio piezophilus
WP_013514961   201 VRSVTIAMVGGHLDIRARK 219 Pseudodesulfovibrio aespoeensis
WP_014321437   198 ARSVSFHMIRDHLTVRAAK 216 Desulfovibrio desulfuricans
BAM32283       206 VSYVDLQMVGDYQSKSEHK 224 Helicobacter cinaedi CCUG 18818 = ATCC BAA-847
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