3DZU


Conserved Protein Domain Family
Nuc_recep-AF1

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pfam11825: Nuc_recep-AF1 (This model is not part of the current CDD release)
Nuclear/hormone receptor activator site AF-1
Nuclear receptors (NRs) are a family of ligand-inducible transcription factors, and, like other transcription factors, they contain a distinct DNA binding domain that allows for target gene recognition and several activation domains that possess the ability to activate transcription. One of these activation domains is at the N-terminal, although there are two distinct motifs within this domain, between residues 20-36 and between 74 and the end of this domain, which are the binding regions. One of the co-activators is TIF1beta, which appears to bind at the first motif.
Statistics
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PSSM-Id: 519902
Aligned: 17 rows
Threshold Bit Score: 72.9064
Created: 15-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3DZU_A        22 SSLTSPTGRGSMAAPSLHPS-LGPgi-----gsPGQLHSPISTLSSPINGMGPPFSVISSPMGP--HSMSV-PTTPTLGF 92  human
5_pfamImport   1 SPLGSPTSHRGM-----HPSlLspts----mgpSGSLHSPISTLSSPMNGLASPFSVISSPMGPplHELTSvPSVLALTF 71 
XP_007243934  56 SPLSSPTGHRGMGPHPLHPSlLtpss---mgstPGHLHSPI-------NGLASPFPVISSPMGH--PSMTG-PSSTSMAF 122
Q0VJ96        18 SSLSSPTGRGSMAAPSLHPSlGPGlgsp--lgsPGQLHSPISTLSSPINGMGPPFSVISSPMGP--HSMSV-PTTPTLGF 92  Norway rat
XP_002933799  25 TSVSSSSNLAAMNSLDVHTGyMGNsm-----ngPRSMTTNMNSLCSPGNNIGPPYRVIASSMGP--HSL---PSPTILNF 94 
XP_031792668   1 --MSPSPALATGKSPDSHSNyIEApv-----svPRTLASPLNAIASPLNALGSSYRVITSAIGP--HSLSL-ATSPGVNM 70 
XP_063549329  35 TSMSPSAALSTVKPMDSHPSyTDTpv-----saPRTLS----AVGTPLNALGSPYRVITSAMGP--PSGAL-AAPPGINL 102
3_pfamImport   1 LPTGSPVV-------EGPPSyLEPpg-----taARALPSPMGAVGSPVSALGSPYRVIASSLGS--HPVAL-SSAPGMNF 65 
XP_006640727  61 TSLSSPNSHRAMNTPTLHPSlMGSgispsslgsSGQLHSPISTLSSPMNGLGSPFSVISSPMGP--HSMSV-PSTPGMGF 137
XP_029693076  56 SPLGSPTSHRGMHPSLLSPTsMGP---------SGSLHSPISTLSSPMNGLASPFSVISSPMGP--HSM----NSPGMGY 120 torafugu
3DZU_A        93 STG-SPQLSSpMNPVSSSEDIKPPLGLNGVLK-----VPAHPSGNM 132 human
5_pfamImport  72 FTG-RFQLNSpMNSVSSTEDIKPPLGINGVMK-----VPAQPSGTS 111
XP_007243934 123 GPSlSPQLSSpMISVSSPEDIKPPLGLNGVMK-----VPAQPTGTS 163
Q0VJ96        93 GTG-SPQLNSpMNPVSSSEDIKPPLGLNGVLK-----VPAHPSGNM 132 Norway rat
XP_002933799  95 PGHeSPPFNL-MNNISCSEDIKPPPGLSNLGSpcmnnYSCNSPGAL 139
XP_031792668  71 VGPpSSQLNV-MNNVRSSDDVKPLPGIQGMGTm---sYPSTSPGSL 112
XP_063549329 103 VAPpSSQLNV-VNSVSSSEDIKPLPGLPGIGNm---nYPSTSPGSL 144
3_pfamImport  66 VAHaSPQLNV-LNNVSSSEDVKPLPGLPGMGNm---nYPSTSPGSL 107
XP_006640727 138 GPSvSPQLNSpMNPVSSSEDIKPPLGLNGVMK-----VPAQPSGTP 178
XP_029693076 121 GASvSPQLNSpMNSVSSTEDIKPPLGINGVMK-----VPAQPSGTs 161 torafugu
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