6BTM,8K9E


Conserved Protein Domain Family
ActD

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pfam11821: ActD (This model is not part of the current CDD release)
Alternative complex III, ActD subunit
Alternative complex III (ACIII) is a multisubunit quinol:electron acceptor oxidoreductase that couples quinol oxidation with transmembrane proton translocation similar to bc1 complex (or complex III). It is a key component of the respiratory and photosynthetic electron transport chains in many bacteria. It has six subunits (ActA-F), ActD subunit represented in this entry. The transmembrane regions of this subunit form part of the TM arm of the complex. Although the function of this subunit is not clear, it may play a role in stabilizing the TM region of ACIII which contributes to a stable menaquinol binding pocket and proton translocation passage.
Statistics
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PSSM-Id: 519900
Aligned: 79 rows
Threshold Bit Score: 113.395
Created: 15-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
6BTM_D         6 IYAIYNDDD--VLMNAVKKTRAAHHHI--EEV--FTPF-PVHGLDKAMGLAP----TRLAICAFLYGCVGISVATTMMSY 74  Flavobacterium ...
WP_012226647   2 IVAAFATEA--GMRKAAAEIRRGDPGF--VET--YMAMePREAEDDGAGDGHmaggSILPAVMLFGGIVGGLGGFLMQAY 75  Gluconacetobact...
Q1QG39         5 LIAEFSDAD--SLISAAVRLKREGHQL--LDA--FTPF-RLPELDSILIVKP----SRIRLSMLVGGLAMAAFFYFLQWY 73  Nitrobacter ham...
WP_013028783   9 LYNNFEEAE--AVVSELRNTDIKGFSSa-DDLvvKSPI-EHPEVEAFLGEKP----VYVQWFTLVGATLGGLLAFSL--- 77  Sideroxydans li...
WP_013292439   9 LYGNFEEAE--AVVQELRNATIKGFDVn-DDMivKSPI-EHPEVERFLGDKP----VYVQWFTLIGALLGGIFGFFL--- 77  Gallionella cap...
WP_012872632   6 VLGVYKDLD--TAIAGVDALNELGYKRddFEVltNAPY-PEGTFGEESGM------HRLGLFPLVGAACGFAVGLLITGA 76  Sphaerobacter t...
WP_013560857   7 hLALFKEEQlnEAVEAIQALREMGISDrnISVisGAPL-----QERMLGRPMt--wTRIPLIGISGAVVGLLTALFFNFG 79  Anaerolinea the...
WP_015903410   8 VTGLYQNQE--ETLAAVEKIQAEGFTV--TEV--HSPI-PSNALARALGTKK----SRIGWFTLTGGIIGFISGFSLAVF 76  Desulforapulum ...
WP_012528563 462 VLALFSNAG--RLVEAAKLSCDGGFQV--MES--FSPV-KIEALDHVLKKRH----SPVRLFTLGGAVSGLVGGFWLAGG 530 Citrifermentans...
WP_012645957 462 VLAVFSNAG--RLVKAVKLVCDAGYRE--MET--FTPV-KVEVVEKVMGHPK----SPVRFWTLAGALAGLAGGLWLAVG 530 Geotalea daltonii
6BTM_D        75 IMIH-----DWPQDIGGKPSFSFiqnmPSFVPIMFEMTVFFAAHLMVITFYMRSRL----WPFKQAENPDVrTTDDHFLI 145 Flavobacterium ...
WP_012226647  76 ATTI-----SYPQNIGGRPDLSW----PSYVPTTFELAVLGAVVAGMAGYLLLARMprlyDPVDEAECMRT-AMLGFYVL 145 Gluconacetobact...
Q1QG39        74 SSVI-----DYPLNTGGRPLNSW----PVFLLVPFEVGMLAAALSGFAAFLWTCRLprlyHPIFDTTDFAR-ATQDRFFL 143 Nitrobacter ham...
WP_013028783  78 --IAgsqanFYAQMKGGKPIVPL----PPDFVLTYEMFILGGVYITVLGFLICAGLparrSPL-----YSAkVSEDQIGI 146 Sideroxydans li...
WP_013292439  78 --ISgaqanFYMQLKGGKPIVPF----PPNFVLTYEMFILGGVFITILGFLICAGLpakrSPL-----YSTkVSVDNIAI 146 Gallionella cap...
WP_012872632  77 TQMA------YPLVTGGKPLFSI----PPMIIIMYEGTLLAAVIFTVIGMLFESRLpr-----lgSSLWDPrISRGYIGI 141 Sphaerobacter t...
WP_013560857  80 TPLL------YPIRVGGMALQTI----PTSFVTIFELTMLGLLISTFLGVFVETISps-----ygPQGYDErISDGYIGV 144 Anaerolinea the...
WP_015903410  77 TAT------RWSLIVSGKPIISW----IPFFVIAFELTILFAVLGNVLGIVTQVGLpdpdYEK----NYDPeCSGSLYGI 142 Desulforapulum ...
WP_012528563 531 TALV------NRLIVGGKPPLSW----VPFCVVAFEGTILLGCLANLLGLALFSRLfrfeT----APYYDPrFSRDRFGL 596 Citrifermentans...
WP_012645957 531 TALV------NSIIVGGKPPVAI----IPYCVIAFEGTILLGSIANLTGLVLHSRLyrlkV----SPFYDRrFSRDKFGL 596 Geotalea daltonii
6BTM_D       146 EVAVNDN---EAELVSFFEGTGAVEVKV 170 Flavobacterium johnsoniae UW101
WP_012226647 146 VARPTDS----ARAHRVLARHAPIGIEE 169 Gluconacetobacter diazotrophicus
Q1QG39       144 LAAQTGKeerSASLRKLLKHSGAVAVRE 171 Nitrobacter hamburgensis X14
WP_013028783 147 LVKSEEGs--VSRFKDIFTKHKALEIQE 172 Sideroxydans lithotrophicus
WP_013292439 147 LVEADESa--ISELKAIFTKHKALEIQE 172 Gallionella capsiferriformans
WP_012872632 142 LVHAPEEk--ADEAAATMRRAGAEDVil 167 Sphaerobacter thermophilus
WP_013560857 145 LFSAPAEl--DARMHEMLTGLGAEIVHR 170 Anaerolinea thermophila
WP_015903410 143 EVASTPEn--AECLKDLLVHTGSikkqr 168 Desulforapulum autotrophicum
WP_012528563 597 LVSCKAGe--VDRLKELLAPSLPEEIHV 622 Citrifermentans bemidjiense
WP_012645957 597 LVSCGEGn--IQSLQGMLSSAAAEEIHV 622 Geotalea daltonii
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