Conserved Protein Domain Family
RP-C_C

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pfam11800: RP-C_C 
Replication protein C C-terminal region
Replication protein C is involved in the early stages of viral DNA replication.
Statistics
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PSSM-Id: 403107
View PSSM: pfam11800
Aligned: 44 rows
Threshold Bit Score: 141.258
Threshold Setting Gi: 151563730
Created: 11-May-2020
Updated: 7-Aug-2020
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q07GS3                   186 PWRDLQDEFSLMLERLPkRSTGTNKLIDIVDWFKSLQARVEAAFe-----AAFDWPEESDANlspqehesESnivslykn 260 Ros...
Q3IUZ8                   191 LWDQLRDKAVLTARALR-RKLTLEELSAYREDLEARLDQARDII-------DGPETEEMITN--------DA-------- 246 Rho...
Q3IVJ0                   196 RAAGIEPRLMPIRRALR-RRLTLADLAEMARTLDLVLGDIRRTL--------ALRAAEMDGT--------VG-------- 250 Rho...
jgi:Oant_4539            191 lrAMIEQRFARVLDAVG-IATKASST--VLRRATGLIEWIIERVmqlphgEPPSARNEDSTRp-------YV-------- 252 Och...
WP_012187065             186 PWTQFTGLFEELLDRLPrRHQASEQLERLLAWFKELQERVEAAYlk--atGAINPVENTDKN--------DAqvmkktqe 255 Din...
jgi:Caul_5212            194 DW---QEAIERASGRLP-RSPTLAELEHLHDRFGALLAAVDRAW-----------VEGRKTQ--------DSrpr----- 245 Cau...
Q5HXT6                   192 lepILEQAVGIMRSRL--RTVQLATLEGLYREMLALSVALAGQCaepesgPDNAPVENAVFS--------TSypaem--- 258 Glu...
jgi:Acry_3518            220 lpaplrtAAQAASRGLK-ALDSSQRLKPAVEALEAIAVDARRALem---aLAGASREQTSIS--------ESvemc---- 283 Aci...
WP_011930733             204 gWVRQADEARRLVARIR-RIEELDEVTLGVTTLENRQADLRGRLea---aMGALKEAGQAPV--------EStnms---- 267 Aci...
goetting:OCA5_pHCG300030 192 PWTQLQARLDVLREH---RATDLDDLMAQVSALEGLREEVENLF------DKGFKDRNFDATvskfrpvlTT-------- 254 Oli...
Q07GS3                   261 mnpsgvNNEPHILTTTQl--------------------------dPVKSNRFETKHAEATPPELPPTEQveksqevdldi 314 Ros...
Q3IUZ8                   247 ------HYERRLHNSNKeti----------------------dlePALEKGGPAAGAPHIERDTSVAGGeeae------- 291 Rho...
Q3IVJ0                   251 ------RIERHHTESKTessdlegghacgktsgeaekdcrniggeSPDEKANRPSPNRAEPDEARPEELaslein----- 319 Rho...
jgi:Oant_4539            253 ------ENDMHKQITNPyslgyckdemrsa--yaeqlsfpkigfaGKTALEKSLGRNSSQVNQPLCSPQ----------- 313 Och...
WP_012187065             256 mnprevISEPHILVTNQl--------------------------iPVISNSSEKEEAADVVPNARPEERvdgeledw--- 306 Din...
jgi:Caul_5212            246 ----gfQSEAHKEPTTQ----------------------------PKAERATYSAWRGSVAESSADSDRdaapae----- 288 Cau...
Q5HXT6                   259 -rpmgpQNGAHYTDTKNiqtskkvdhvaad---ggiriepmrcegPSSGTNRSSVYDRTALRGFKG-------------- 320 Glu...
jgi:Acry_3518            284 --pkghADVPHITTTNQilypnkdtvialkecsrgdlpgrtaqtkPPARQERQERQDRGSSLKL---------------- 345 Aci...
WP_011930733             268 --pkglTDEPHITHTNQtldptdhvsasr-----krnstsggagtSAGGSTRTGRNGDGKEAGHRPTGSratkpeip--- 337 Aci...
goetting:OCA5_pHCG300030 255 ------AEPSDSESGNHessran-----------------arhpnPFAAFGRATEKKSDGVPRPPQSSKtaaqv------ 305 Oli...
Q07GS3                   315 ewsthtgkrtSDVDIPMLMLTCPQFAELARDmeGYIRDWNGVHRAAGKVRPMVGISESAWNVAQQTLGPAVAAAALALIY 394 Ros...
Q3IUZ8                   292 ------tkrlPKIPLHLVIAGCPSLKTFYQ---GEVRHWHQLYSAASHVRPAMGISASAWEEAQRFMGPEQASIVVVAML 362 Rho...
Q3IVJ0                   320 ----dnqrpaPTLPLGLVLKACPDLEPYAPE----IRNWRDLTAAASRLRGMMGITPSAWEEAKAEMGAETASVALAAIL 391 Rho...
jgi:Oant_4539            314 ----------ALVALQDLIRATPALTTYGV---SRPRTWTELARLAPQICRIAGISEDARRRAVDQMGEQAAAIAIAITL 380 Och...
WP_012187065             307 --vaevrkkrTALDLPTIMQACPEFASWARNmgGFLKDWGDLHRVAGQLRPMIGISEHAWNVAQDRMGTQVATAAFALVF 384 Din...
jgi:Caul_5212            289 -----gslneEVIPLSLALEAIPEIHDHLDDvaG--AEWEDFVQAAYQVTVLLGVNLAAWREARETMGRNRAAVAVATVL 361 Cau...
Q5HXT6                   321 -------------TATFYLEICSNLRDFCS---TGRPSAEQLIEAAEYLSGQVGVTCHAWSQACVVLGRLQAAVAVIVMA 384 Glu...
jgi:Acry_3518            346 -------------TPDELVRLAPRLVPYLR---HPSPSWPEIVDAADWLRHDLGVSKPLWGEACLAMGREQAAIALALVS 409 Aci...
WP_011930733             338 -----pdgtvfrmTPDELVRLAPRLRAYLA---KSSPGWPEIVEAADWLRHDLGVSKPLWGDACLAMGREQAAVALAIVS 409 Aci...
goetting:OCA5_pHCG300030 306 -----lnddaQMISLPLVQAACPAVREFAP---DAFTDWRAFRASGQVLCAAAGINPQVLQEAQAILGPDLAASALAITV 377 Oli...
Q07GS3                   395 DKHatGEV-SSPGGYLRGMVEKAMVGELHLDRSFYGRLGERA 435 Roseobacter denitrificans OCh 114
Q3IUZ8                   363 ERF--AEI-RSPGGYLRALTTKAAAGEFSCGPMIMALISRRD 401 Rhodobacter sphaeroides 2.4.1
Q3IVJ0                   392 QRF--ASI-RNPGGYLRALTRRASEGAFSPTPMIMALLAETR 430 Rhodobacter sphaeroides 2.4.1
jgi:Oant_4539            381 QKLdeRQV-KSPGGYLRAMTARAAAGELHLARSVFGLAARHG 421 Ochrobactrum anthropi ATCC 49188
WP_012187065             385 EKHsaGEV-ASPGGYLRGMVEKAGAGELHLERSFYGRLSGqa 425 Dinoroseobacter shibae
jgi:Caul_5212            362 ARWrdGEIkSSAGGYLRAMCERERVGALHLLPSLYGLKERHT 403 Caulobacter sp. K31
Q5HXT6                   385 SRLerGAViRFRDAYFRSLIERGARNTLFLDRSLYALRDHRT 426 Gluconobacter oxydans
jgi:Acry_3518            410 AKPp-GHFrSSPGGYFHGMVERARDGGLHLDRTIWGLRGASa 450 Acidiphilium cryptum JF-5
WP_011930733             410 TKPs-DHFrGSPGGYFHGMVARARAGELNLARSIWGIRAASG 450 Acidiphilium cryptum
goetting:OCA5_pHCG300030 378 QRSnsGAV-AKPGAYLRTLVQRGRDGELHLSRSLFALAKAge 418 Oligotropha carboxidovorans OM5
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