Conserved Protein Domain Family
YgbA_NO
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pfam11756: YgbA_NO (This model is not part of the current CDD release)
Nitrous oxide-stimulated promoter
The function of ygaB is not known but it is a promoter that is stimulated by the presence of nitrous oxide. It is regulated by the gene-product of the bacterial nsrR gene.
Links
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Statistics
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PSSM-Id: 519867
Aligned: 40 rows
Threshold Bit Score: 145.444
Created: 15-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
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PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
WP_022356268   5 TKRQKEKDTVALMIEIYCKKH-HKSK--------------HLCQECQQLKDYAFTRSDKCPFMETKTFCSNCKVHCYRPD 69  Faecalitalea cy...
Q6LRI7        11 GSLRSEFKTVQLMTNIYCKAH-HKIAqhavsspdtlkpngKLCEQCVDFLEYALLRLDRCPYGENKPTCRQCPIHCYKPE 89  Photobacterium ...
Q8EJY2         9 GKLRYEHQTISAMAKIYCQAK-HQEQte-----------sGLCTDCVALLDYAAVRLDRCPYGQEKPTCNKCPVHCYKPA 76  Shewanella onei...
Q088P9         9 GKLLYEFRTMQAMVEIYCKAH-HPLKps-----------qGVCLQCSEFLSYANTRLDRCPYGQDKPTCNKCPVHCYKPH 76  Shewanella frig...
WP_013053231   9 GKLLREYQTIAAMVEIYCKAHkHDAKp------------mSACPECLEFLAYAHTKLDRCPYGQDKPSCKKCPVHCYKPQ 76  Shewanella viol...
WP_015465311   6 GRLGVEFKTIRAMVNIYCHNK-HPAK--------------ETCAECQAFLSYANEKLDRCPYGQNKPTCNKCPIHCYKKE 70  Psychromonas sp...
WP_011770604   8 GKLGLEFKTIKAMVAIYCQKH-HSSTalms-------gqkTLCACYAEFILYANEKLDRCPYGQNKPTCNKCPIHCYKTA 79  Psychromonas in...
WP_011761433   9 GNLGREFATICAMVAIYCRDH-HGGK--------------TPCTECQAFMEYAKTRLDRCPYGQEKPTCNKCPVHCYKPE 73  Shewanella amaz...
Q87HI7         7 GKLATEFKTVKAMVEVYCHDH-HGTKd-------------ALCSECRELLEYAEVRLDRCPYGEEKPTCNKCPIHCYKPE 72  Vibrio parahaem...
Q5DYZ2         9 GKLNTEFKTVSAMIEIYCKKH-HNAT--------------HLCEECQQLMDYAEVRLDRCPYGENKPTCNTCPIHCYKPE 73  Aliivibrio fisc...

WP_022356268  70 MQQKIREVMAYSGPRMLFYHPVMAIKHVIETQKEKRRLEN 109 Faecalitalea cylindroides
Q6LRI7        90 YKAMSQTIMRYAGPRMLFTHPILAIKHLLAERRPVPMKPT 129 Photobacterium profundum
Q8EJY2        77 QKAQVKQIMIFAGPRMLLPHPIRAIKHLLAERHPVPTSVP 116 Shewanella oneidensis
Q088P9        77 MKQRAREIMMYAGPRMLLPHPIFAIKHLLAERKPAPGLPP 116 Shewanella frigidimarina NCIMB 400
WP_013053231  77 MKDKAREIMVFAGPKMLFPHPIMAIRHLLSARDLVPNKPP 116 Shewanella violacea
WP_015465311  71 QREQARTIMRYAGPRMLLWHPILAFKHLHAEKHPIPQKIP 110 Psychromonas sp. CNPT3
WP_011770604  80 QREQARIIMRYAGPRMLLSHPILAIKHLLAEQRPVPESIP 119 Psychromonas ingrahamii
WP_011761433  74 PRELARQIMRYAGPRMLLPHPIMAIRHLLLERKPAPEKPP 113 Shewanella amazonensis
Q87HI7        73 PKEQMRLVMRYSGPRMLLKHPILAVRHLLHEKREVPEKPA 112 Vibrio parahaemolyticus
Q5DYZ2        74 PKEQMRLVMRFSGPRMLLHHPILAIRHLLSEKRTVVDKPQ 113 Aliivibrio fischeri ES114
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