Conserved Protein Domain Family
KfrA_N

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pfam11740: KfrA_N (This model is not part of the current CDD release)
Plasmid replication region DNA-binding N-term
The broad host-range plasmid RK2 is able to replicate in and be inherited in a stable manner in diverse Gram-negative bacterial species. It encodes a number of co-ordinately regulated operons including a central control korF1 operon that represses the kfrA operon. The KfrA polypeptide is a site-specific DNA-binding protein whose operator overlaps the kfrA promoter. The N-terminus, containing an helix-turn-helix motif, is essential for function. Downstream from this family is an extended coiled-coil domain containing a heptad repeat segment which is probably responsible for formation of multimers, and may provide an example of a bridge to host structures required for plasmid partitioning.
Statistics
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PSSM-Id: 492068
Aligned: 62 rows
Threshold Bit Score: 33.7898
Created: 21-Aug-2024
Updated: 4-Dec-2024
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
EEF26803           8 SADQIRATVLAMLAEG--SEAhpsagaiapvtrerfrravSVRRLRARL------G-AGDPAVLSRALNAIEAELVQAGL 78  
WP_011798616       8 gpitlADVRAALADTDpsRT--------------------NAGALRKVL------G-RGSYATIQKHLDAIRAERAPAPP 60   Polaromona...
WP_015203589       7 SKEQVYAACEMLISKD--EKL-------------------TLDGIRKHI------G-GGSKTTINKWFKQYKDEFPNKVY 58   Crinalium ...
WP_012585393       8 TYEHVRQACYEILAKG--ERP-------------------TRPAVQELLssdryvGqKGSNAVVQNHIQEFWSAMANTLQ 66   Thauera am...
Q5NX78             7 SFEDVRNAFFEVLAEG--GNP-------------------TFEAIYTKI------GrRGGADVVRKLIAEVKTEAANLHE 59   Aromatoleu...
WP_012403363      10 iDEQVTAIADRMTEEGhlVSP---------------------VTIWAEV------R-SGSIVAVAAALQRWRDARKPQIP 61   Paraburkho...
WP_011733918       6 SYEMVAGACEKLEREG--LKI-------------------TGRSVLTVT--------GGSLATVLGHIKRWRLNKESAPS 56   Pelobacter...
HuoZJU:KKY_3888   11 TLEKVKDAVERLHREG--RKA-------------------TANAVISAI------G-GGSKPTVLKHLQTLRKPAEAADD 62  
WP_012979609       7 TDEAIIEAGRALVEQG--RNV-------------------TGFALRQVI------G-SGAPNRLKTVWDRHQAQGLPQPE 58   Allochroma...
WP_014133090       7 aQEEIIKAGQELQESG--RNI-------------------TGFALRTKV------G-GGNPSRLKQVWDEYVSSQSVVKT 58   Methylotuv...
EEF26803          79 TQVal--pGLPEAIAEQM--------HALWAAAVS-------VQLD----DVVRLKTEARDAMDGAETAR----HDA-AL 132 
WP_011798616      61 EAPg----AVPAPPAEAL--------HAIWGAAWA-------QAQV---------MTLARMERLSAERDTalalAAAqAQ 112  Polaromona...
WP_015203589      59 DAArv--iPMPDIVQEQYqk----lwALTYAMAED-------KAESdyvkTLEDENGELKEKNLELEQTK----AEL-KQ 120  Crinalium ...
WP_012585393      67 VPVrt-vdGIPEAFVTIIdr----alGDMVQVAKR-------LAEE----GLREREAHLDKRSREMEATA----QEAnER 126  Thauera am...
Q5NX78            60 KLTlsrmpGVPDPLVDLLne----faRTSWDLALD-------GATK----NLEAARADLERKEDALEEEN--------KA 116  Aromatoleu...
WP_012403363      62 QTQaq--kAMPGEFAETLme----vaRRIWTASQD-------DAQR----LLNEGLGAASQQVDVFRKER----DEA-LA 119  Paraburkho...
WP_011733918      57 LVPl----EIPTDVQGVIl-------RALGQAQVD-------AADK---------LKEEIDQAGAREAEAleglSGA-ER 108  Pelobacter...
HuoZJU:KKY_3888   63 --------QMPSSVLDLAkp----viAEIFAQGIK-------AEEL----RQRESQERFHRVMGDLEAQI----EEI-AE 114 
WP_012979609      59 PR------PLPDGIVNVLdrleteysKQLYKLALEiqalahqEAEQ----TLQAGRDQWQHDRQALEQEV----EDA-SQ 123  Allochroma...
WP_014133090      59 EPVa----ELPIEVADEVaavtksltDRLASLAVE-------LNDK----AVKAAERRVAEVIRTAGEQR----EQAeRE 119  Methylotuv...
EEF26803         133 RVELLRVEL 141 
WP_011798616     113 DVAGLAAEI 121  Polaromonas naphthalenivorans
WP_015203589     121 LKESyemtm 129  Crinalium epipsammum
WP_012585393     127 ALEshqlrl 135  Thauera aminoaromatica
Q5NX78           117 LRATADDFV 125  Aromatoleum aromaticum EbN1
WP_012403363     120 AYQKTDEEV 128  Paraburkholderia phymatum
WP_011733918     109 RIEQLTDEL 117  Pelobacter propionicus
HuoZJU:KKY_3888  115 AGEVLETan 123 
WP_012979609     124 TVETLEQQM 132  Allochromatium vinosum
WP_014133090     120 LADAsqtvd 128  Methylotuvimicrobium alcaliphilum
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