7ZNK


Conserved Protein Domain Family
Thoc2

?
pfam11732: Thoc2 (This model is not part of the current CDD release)
Transcription- and export-related complex subunit
The THO/TREX complex is the transcription- and export-related complex associated with spliceosomes that preferentially deal with spliced mRNAs as opposed to unspliced mRNAs. Thoc2 plays a role in RNA polymerase II (RNA pol II)-dependent transcription and is required for the stability of DNA repeats. In humans, the TRE complex is comprised of the exon-junction-associated proteins Aly/REF and UAP56 together with the THO proteins THOC1 (hHpr1/p84), Thoc2 (hRlr1), THOC3 (hTex1), THOC5 (fSAP79), THOC6 (fSAP35), and THOC7 (fSAP24). Although much evidence indicates that the function of the TREX complex as an adaptor between the mRNA and components of the export machinery is conserved among eukaryotes, in Drosophila the majority of mRNAs can be exported from the nucleus independently of the THO complex.
Statistics
?
PSSM-Id: 519856
Aligned: 84 rows
Threshold Bit Score: 77.5331
Created: 15-Feb-2025
Updated: 28-Apr-2025
Structure
?
Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
7ZNK_B        568 IGKLSHSNPTILFDYILSQIQKYDNLITPVVDSLKYLTSLNYDVLAYCIIEALANPEKE-RMKHDDTTISSWLQSL 642  human
A0BH94        570 FAKLSHNQPMIVMNVLRRNRLEIPDNNSVIVHTLGLATPLSLDILQFIMIQWLCDFNDEsKVRDKDIECRYWFKNI 645  Paramecium tetrau...
XP_003687075  662 LS----TNPLATLTNVVEQVENYDKVTELVIITAKYFNNFAYDVLQYIILQRISQQ-RN-TVQDDGVNPTSWVTRI 731 
XP_013935006  578 LTRTAFGNPLAVTSTFVNHIESYSSLSDLIVEASKYFGAFVWDSLTFQLCNKLNSN-RQ-AMQEDGLNYMQWIQNL 651 
XP_002489906  655 LAKIALSNPIPCLLVIVQQLESYDNLNELIVDVSKYFNDFTWDVLPFIILIRLTVN-RP-HYQPDGINISQWLQSL 728 
XP_011274612  657 FSKIAFANPLPSFLVIVTQVESYDNFSDLIVDAARFFTDYAWDVLPFVLLMRLTTR-RQ-FVQSDGLNDAQWLQSL 730 
7_pfamImport    1 LAKITYTNPLPCFLTVLQQIESYDNLNSLVVETARYFNGYGWDVLPLALLMRLTASGRS-NVQADGLNDRQWIQSL 75  
XP_001384013  623 LAKISFSNPLPCFLTILQQIESYDNLNTLVVETARYFNKYGWDNLTAAILMRLTLAGRS-STQDNGMAERQWLQSL 697 
XP_001482336  600 LAKISFANPLPCLLTILQQIESYDNLISLVVDTAKYFNQYGWEALTLAILMRLSASGRS-SIQQDGLNERQWIQSL 674 
Q6CGS6        571 LAKISYANPLPTFTAFVSQVESYDNLSDLVVEAAKYFTDLGWDALPFVIILQLTSSGRD-TVQKDGLNDRKWLQSL 645  Yarrowia lipolytica
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap