Conserved Protein Domain Family
Capsid-VNN
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pfam11729: Capsid-VNN 
nodavirus capsid protein
The capsid or coat protein of this family is expressed in Nodaviridae, that are ssRNA positive-strand viruses, with no DNA stage. These viruses are the causative agents of viral nervous necrosis in marine fish.
Links
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Statistics
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PSSM-Id: 288565
Aligned: 2 rows
Threshold Bit Score: 727.343
Created: 24-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
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Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
Q91D83   1 MVRKGDKKLAKPPTTKAANSQPRRRATQRRRSGRADAPLAKASTITGFGRATNDVHISGMSRIAQAVVPAGTGTDGKIVV 80  Striped jack nervous ...
Q91D83   1 MVRKGDKKLAKPPTTKAANSQPRRRATQRRRSGRADAPLAKASTITGFGRATNDVHISGMSRIAQAVVPAGTGTDGKIVV 80  Striped jack nervous ...

Q91D83  81 DSTIVPELLPRLGHAARIFQRYAVETLEFEIQPMCPANTGGGYVAGFLPDPTDNDHTFDALQATRGAVVAKWWESRTVRP 160 Striped jack nervous ...
Q91D83  81 DSTIVPELLPRLGHAARIFQRYAVETLEFEIQPMCPANTGGGYVAGFLPDPTDNDHTFDALQATRGAVVAKWWESRTVRP 160 Striped jack nervous ...

Q91D83 161 QYTRTLLWTSTGKEQRLTSPGRLVLLCVGSNTDVVNVSVMCRWSVRLSVPSLETPEDTTAPITTQAPLHNDSINNGYTGF 240 Striped jack nervous ...
Q91D83 161 QYTRTLLWTSTGKEQRLTSPGRLVLLCVGSNTDVVNVSVMCRWSVRLSVPSLETPEDTTAPITTQAPLHNDSINNGYTGF 240 Striped jack nervous ...

Q91D83 241 RSILLGATQLDLAPANAVFVTDKPLPIDYNLGVGDVDRAVYWHLRKKAGDTQVPAGYFDWGLWDDFNKTFTVGAPYYSDQ 320 Striped jack nervous ...
Q91D83 241 RSILLGATQLDLAPANAVFVTDKPLPIDYNLGVGDVDRAVYWHLRKKAGDTQVPAGYFDWGLWDDFNKTFTVGAPYYSDQ 320 Striped jack nervous ...

Q91D83 321 QPRQILLPAGTLFTRVDSEN 340 Striped jack nervous necrosis virus
Q91D83 321 QPRQILLPAGTLFTRVDSEN 340 Striped jack nervous necrosis virus
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