6RJ0,6RJ0


Conserved Protein Domain Family
Capsid-VNN
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pfam11729: Capsid-VNN (This model is not part of the current CDD release)
nodavirus capsid protein
The capsid or coat protein of this family is expressed in Nodaviridae, that are ssRNA positive-strand viruses, with no DNA stage. These viruses are the causative agents of viral nervous necrosis in marine fish.
Links
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Statistics
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PSSM-Id: 519854
Aligned: 2 rows
Threshold Bit Score: 729.6
Created: 15-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
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PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
6RJ0_B   1 VRKGNKKLAKQATTKAVNPQPRRRNNNRRRGMRADAPLAKASTITGFGRGTNDVHLTGMSRIAQAVIPAGTGTDGYIVVD 80  Betanodavirus sp.
6RJ0_B   1 VRKGNKKLAKQATTKAVNPQPRRRNNNRRRGMRADAPLAKASTITGFGRGTNDVHLTGMSRIAQAVIPAGTGTDGYIVVD 80  Betanodavirus sp.

6RJ0_B  81 ETIVPELLPRLGFAARIFQRYAVETLEFEIQPMCPANTGGGYVAGFLPDPTDSDHTFDAIQATRGAVVAKWWESRTIRPQ 160 Betanodavirus sp.
6RJ0_B  81 ETIVPELLPRLGFAARIFQRYAVETLEFEIQPMCPANTGGGYVAGFLPDPTDSDHTFDAIQATRGAVVAKWWESRTIRPQ 160 Betanodavirus sp.

6RJ0_B 161 YARALLWTSVGKEQRLTSPGRLILLCVGNNTDVVNVSVLCRWSVRLSVPSLETPEDTFAPILTLGPLYNDSLAANDFKSI 240 Betanodavirus sp.
6RJ0_B 161 YARALLWTSVGKEQRLTSPGRLILLCVGNNTDVVNVSVLCRWSVRLSVPSLETPEDTFAPILTLGPLYNDSLAANDFKSI 240 Betanodavirus sp.

6RJ0_B 241 LLGSTQLDIAPEGAVYSLDRPLSIDYNLGTGDVDRAVYWHVKKVAGNAGTPAGWFHWGLWDNFNKTFTQGTAYYSDAQPR 320 Betanodavirus sp.
6RJ0_B 241 LLGSTQLDIAPEGAVYSLDRPLSIDYNLGTGDVDRAVYWHVKKVAGNAGTPAGWFHWGLWDNFNKTFTQGTAYYSDAQPR 320 Betanodavirus sp.

6RJ0_B 321 QILLPVGTLFTRADSGN 337 Betanodavirus sp.
6RJ0_B 321 QILLPVGTLFTRADSGN 337 Betanodavirus sp.
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