Conserved Protein Domain Family
YagK_YfjJ_C

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pfam11726: YagK_YfjJ_C (This model is not part of the current CDD release)
YagK/YfjJ C-terminal domain
This domain is found at the C-terminal of a group of uncharacterised proteins from bacteria, such as YagK and YfjJ from E.coli. This domain is structurally similar to viral Rep proteins and bacterial relaxases based on structure predictions and comparison, containing also the conserved HXH motif typically found in those proteins.
Statistics
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PSSM-Id: 519852
Aligned: 11 rows
Threshold Bit Score: 127.519
Created: 15-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
P52125         26 LNEHLNSMILRVDLHD--------------PIDTENM--DNpffqprvdsGAISRFTSALKAKL------------KHDK 77  Escherichia co...
Q8EGZ4         35 VQNYSKVFAVRVDLRF--------------PDMFESG--DT---------AVITRFFESLKAQL------------KADY 77  Shewanella one...
P77657         27 TNRYPRLIAVRVDLHY--------------PKIVDNG--DNiccfpnlepGVISRMRESLRAKL------------EADR 78  Escherichia co...
jgi:Tola_2275  42 LRYYSRVRAFRIDLRF--------------ANDYMDGdvDTpshfqqadpKAITRFFESLKSQL--------------KV 93 
WP_025421278   43 LEHDNRIFACRTDLRF--------------AEDHVSDdpDSlvchqrvdpQAITRCIESLKSQL------------REDH 96  Sodalis praeca...
Q5E061         47 ITEYPRTMVVRVDLRM--------------SKSLLFD--NS---------SVIKNFIASLDSQI------------QADL 89  Aliivibrio fis...
WP_012979588  184 FERYARLLVVRVDLSF--------------------------------------LTPSQCHDRDwtpvtfedalayRERF 225 Allochromatium...
Q9KUM0         49 LNQYPRIFAVHINLNL--------------PSDFGEDy-----------lTVFAHFFRILESAT-------------NEL 90  Vibrio cholerae
Q9KUL9         44 LTQYQRTLAMRLDLYL--------------PKDHQDT--DL---------SILNDYFDILKEKI------------DAD- 85  Vibrio cholerae
Q9KUM1         41 LEQYARLFIVRVDLNL--------------PTDFRGD--DS---------AVMTRFFRSLKSQV-------------AAY 82  Vibrio cholerae
jgi:Tola_1169  38 VNEHPRTFAIRIDLRLpglgchaplmehdmPTSFAKT--DS---------SVISRFFSSLEAKI------------ISDI 94 
P52125         78 HIKTQRkdWPDSRHSTLRYAWVREYTKNRKRHYHLILCFNQDAYYHLGDYD-LNRNTLRTMITTAWYSALGIPIDSSG-K 155 Escherichia co...
Q8EGZ4         78 QAKLRNttDGLVHASELFYIWVKEISGRDKCHYHVCLFFNGHAYKSLGKFE-LDRANMYNRIHKAWASALRLDISHVQ-G 155 Shewanella one...
P77657         79 TRKVRE--DKRIYRCPLFIIWAKEYSESGKCHYHICLLFNKDAYYHLGDYD--QDDNLRGMITGAWYSALRLERDDHP-G 153 Escherichia co...
jgi:Tola_2275  94 YRKNKN---IMVSRDDFKYIWTREKDESFHHHYHLVLLFDKDVYYHLGDCSpDNSSGIAAMIQKAWCSALRVSFPEYA-T 169
WP_025421278   97 RRSGRH-----GKPALPAYVWARERDTSEHPHYHLMLLFKRNVYGYLGNYTnRDADNMATRMQKAWCSAVGLNYPYYA-A 170 Sodalis praeca...
Q5E061         90 NRKKRK--GIRVRACKIRYVWVKERSTSLSNHYHLVLFFNKDVYHCLGDFK--NEDNLSHKIKKAWCSALDLDINEGS-R 164 Aliivibrio fis...
WP_012979588  226 TRSWKR---EPLFEHLVGYVWKIEHGALKGFHTHWLFFFDGSKV--------REDMTLGHLIGEHWKVIV---------- 284 Allochromatium...
Q9KUM0         91 CKDKYTdrTYRYQQTVIRYIWAKESK-STSKHHHLILLFDRDLFQNLGTGReGWGRFLYKKVRKTWDRVVEAYYRQPCsG 169 Vibrio cholerae
Q9KUL9         86 ---------------SLPYVWRKRADKTPSHNYRVMLFLDDSQYFGPAICW-DKGNQLVDHLKTAWKEAIEKHYKGKErS 149 Vibrio cholerae
Q9KUM1         83 RRRSARlnRKPYRETTIRYVWAKECDTSTSSHYHVALIFDRNIFRSLGDFG-EYQQSLANRIRNAWKRSVEAMYSGKEkP 161 Vibrio cholerae
jgi:Tola_1169  95 NARKRT--GTRVHSCTLRYAWVKEQNNEHKDHYHTFILLNKDTYAFLGQYT--GINNLAYIIMSAWSSALGLHIDLAR-E 169
P52125        156 LVNYPPNGKYLLN-RKRDNFEQTY----------------SDLMNRVDYMTK---VRTKIVGDGDRNFGCS 206 Escherichia coli K-12
Q8EGZ4        156 LIHFPENAQYLLC-RNQADFTYIY----------------QDLFKRLSYFAK---TDTKIYGNGNHNFGCS 206 Shewanella oneidensis
P77657        154 LVHFPENCKYVLD-TNSTDFQQNY----------------QALLTRLDYLTK---VESKVFGEGDRNFGCS 204 Escherichia coli K-12
jgi:Tola_2275 170 LVHFPDNCAYNLEgKNATLQDEKF----------------IWALERFLYLSK---VDTKTTDDGFRNFGCS 221
WP_025421278  171 LANFPKNQSFKFDrSDALARSPVY----------------VDFLLRLSYLAK---ENTKDVHDGYRNFGTS 222 Sodalis praecaptivus
Q5E061        165 LVNFPNNGVYWLD-KNSRNFDDDF----------------DSLFYRASYLAK---LETKKYGNGMRSFGCS 215 Aliivibrio fischeri ES114
WP_012979588  285 -----GSHATYWN-CNV--YKTQYrhlgigqidhadqtkrQALQRVVQYLCKvddFISLKHTGRRRAFGRg 347 Allochromatium vinosum
Q9KUM0        170 LAYSPTNEGFELF-SDTESFPLQL----------------NEFFYRISRLAKptaNRNAHP---NKSFGCS 220 Vibrio cholerae
Q9KUL9        150 IILFNNRGNDGLGtRCKSKDTNIK----------------RCVFHRLSSFAEawkEE-------RYCFGSS 197 Vibrio cholerae
Q9KUM1        162 AIHFSKQGQYHLL-RNSEEFGEVF----------------QSVFYRLSYLAK---RRTKHFGKRMNNFGHS 212 Vibrio cholerae
jgi:Tola_1169 170 LVHLPENPCYYLD-VNKPDFNLNL----------------DRFIYRISYMAK---AKSKNINPQYRSFGCS 220
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