Conserved Protein Domain Family
DUF3811

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pfam11656: DUF3811 (This model is not part of the current CDD release)
YjbD family (DUF3811)
This is a family of proteobacteria proteins of unknown function. This family is unrelated to pfam03960 which contains a set of transcription factors that are also named YjbD.
Statistics
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PSSM-Id: 519824
Aligned: 7 rows
Threshold Bit Score: 66.834
Created: 15-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
tigr:AHA_3961  2 KDLTDAEKAEITLLLQKAQANTDHQLSNAERNRIREEGRLKIVADRAAAAKVAAKlarEKAKERANKQvLPETFSWVDSV 81 
WP_025422173   9 KEMTDSEQRELKTLLDRTRKAHGRPLTNGESNRIKDEFIARLTAEREAAAKQARA---AKKKLALKPD-ISATYQWSAQM 84  Sodalis praecap...
WP_002445414   9 KEMTDAEQRELKTLLDRERIAHGRTLTNSEANRVKKEYIDKLMIQREADARKARQ---AKKKQAYKPD-ASSTFSWSAST 84  Shimwellia blattae
Q328Q0         9 KEMTEREQRELKTLLDRARIAHGRVLTNSETNSIKKEYIDKLMVEREAEAKKARQ---LKKKQAYKPD-PEASFSWSANT 84  Shigella dysent...
Q6D513         7 KDMTESEQRQLKTLLDQARKKQDRPLTNSESNHIKDDYIDKLMKEREAVAKQARA---EKKKNKFKPD-SSTTYEWSANT 82  Pectobacterium ...
1_pfamImport   7 AEMTEPQKIRVRTRLAQEQKKLGRPLTNAEQNKVKDQIITEISKEVDAAAAKVRA---QKKKDKIKPGgGEETFNWSAKT 83 
2_pfamImport   7 KEMTESEQRDVKTQLDRARINLGRALTNSEQNKVKDEAIEKIMHAREQIAKLTRV---ERKTKKTAP--STTTFSWSASI 81 
tigr:AHA_3961 82 SNkfRSKR 89 
WP_025422173  85 HS--RGKR 90  Sodalis praecaptivus
WP_002445414  85 STanRGRR 92  Shimwellia blattae
Q328Q0        85 ST--RGRR 90  Shigella dysenteriae Sd197
Q6D513        83 NL--RGRR 88  Pectobacterium atrosepticum
1_pfamImport  84 HT--RGLR 89 
2_pfamImport  82 ST--RPPR 87 
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