7LBM


Conserved Protein Domain Family
Med28

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pfam11594: Med28 (This model is not part of the current CDD release)
Mediator complex subunit 28
Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Subunit Med28 of the Mediator may function as a scaffolding protein within Mediator by maintaining the stability of a submodule within the head module, and components of this submodule act together in a gene-regulatory programme to suppress smooth muscle cell differentiation. Thus, mammalian Mediator subunit Med28 functions as a repressor of smooth muscle-cell differentiation, which could have implications for disorders associated with abnormalities in smooth muscle cell growth and differentiation, including atherosclerosis, asthma, hypertension, and smooth muscle tumours.
Statistics
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PSSM-Id: 519790
Aligned: 43 rows
Threshold Bit Score: 42.6294
Created: 15-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
7LBM_o        43 TLVD---------ELESSFEACFASLVSQDYVNG---------TDQ-EEIR----TGVDQCIQKFLDIARQTECFF---L 96  human
ORX41960      16 QLLN---------NITDSLNNLIKLI-----------------PENlEEKR----IDGDNSSSNYINTINDSLNLLkanV 65 
XP_003294505  11 NIIDingptilfkNLNESLEKLIESLIKNDRENQif-----------------ieDTLDRKIDTLLNNSKKLESYF---V 70 
KYR02297      32 ILLQ---------NLNMNLQEFLQMLIA---------------SNSnDSNQldidNRLNSQIDNFIGSAKDMELYF---K 84 
XP_066006221  11 TLLE---------QLSLELHECLGKIIPDINEEAlnqtkkaeyPDKyEEVErikeKLVENQTHKFLSVAKQLEIEF---- 77 
ORX55600       7 ELVD---------KLSSTFDKCLGNALSD--------------TSKeEKDK----LDVTILKQCFIDLQYQL-------- 51 
EPB88027       5 GITD---------ELSKSFDACLETILADPQQKE--------------EDA----ESLDTQLAALKSSFLKIENQL---R 54 
VDP67220       6 KVLS---------DLETQLDNIFMVLSSTSLHD----------SDIsESQH----GLNDKHMASLLDACRQMDSWF---I 59 
VDL34647       8 DVLE---------EFERQCDNLLLSLSSMDF------------SSQsNFTE----CRFGDITEKFIDSCRALDAWF---I 59 
VDO00454       7 GVLD---------EFERQCDNLLLSLSSMDF------------SPQsNFAE----CRFGDVSENFIESCRDLDSWF---T 58 
7LBM_o        97 QKRLQLSVQKPEQV-IKEDVSELRNELQRKDALVQKHLTKLRHWQQVL 143 human
ORX41960      66 TTTLVKTYENPELT-IQKEIKELEKEKDVKDYVIQRTYNNLRIWNSIL 112
XP_003294505  71 SLQNKYSEEKNKIQ-LKQELIKVKREIENKDRLIEKYKYKVKEWKSHF 117
KYR02297      85 EIQSKHKNEKSITE-IKQEITKIKVEIENKDKLIEKYSKKVKEWKSHF 131
XP_066006221  78 -NKIVFSERQTEEViLKEEIDGLRQTIGQQKEVITKYTLLMKQWTKEF 124
ORX55600      52 -KSISLASIQQKPLsVKESIAALEKDIAIKQQTIEKYNGKIEHWLTVL 98 
EPB88027      55 DIRLK-ALSSKELS-VTESNKLLRRDIDIKKSTIDKYVTKIENWEKEL 100
VDP67220      60 KKRLALSTYCQEYA-LKEEIDALNAECIRKEKLAQELKGRIEDYSKSI 106
VDL34647      60 HKRLIINTKCPEYE-LADELNKLRKELEDKRKYVHYLRWRISAYVSSI 106
VDO00454      59 CKRFIINTKFPEYE-LTNEINRLRKELEDKQTYLNYLRGKISAYVSSI 105
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