7LBM,5U0P


Conserved Protein Domain Family
Med27

?
pfam11571: Med27 (This model is not part of the current CDD release)
Mediator complex subunit 27
Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species {1-2]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Mediator exists in two major forms in human cells: a smaller form that interacts strongly with pol II and activates transcription, and a large form that does not interact strongly with pol II and does not directly activate transcription. The ubiquitous expression of Med27 mRNA suggests a universal requirement for Med27 in transcriptional initiation. Loss of Crsp34/Med27 decreases amacrine cell number, but increases the number of rod photoreceptor cells.
Statistics
?
PSSM-Id: 519776
Aligned: 41 rows
Threshold Bit Score: 75.3911
Created: 15-Feb-2025
Updated: 28-Apr-2025
Structure
?
Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
7LBM_n       228 LDIWSKSNYQVFQKVTDHATTALLHYQLp-QMPDVVVRSFMTWLRSYIKLFQAPCQRCGKFLQ--DG----LPPTWRDFR 300 human
6_pfamImport   1 --MWHVSTGR--QQNQSKLATDILGCIQs-RQRQWDLQYLLDMLASYADIKRSPCVSCKKMINsnAQ----LPTVRKPKA 71 
4_pfamImport   1 VPDWRVFTRTPGGQTPSKVETAVAQCLNs-RPRQWDLLYLLDMISSYSTIKQTPCAKCTKMTDstAT----LPTIRKPSS 75 
GAD96507     241 gmGWRVSNKQSPGKPKTKLETSVSMSLNq-RPRKWDLAYLLEMISSYSEIKKTPCVKCNKMIDntTL----LPTIRRSKT 315
XP_050467907 257 VPEFNVSSKSPSGEPSSRVETAVLACLNa-RPRKWDLKFLFGMISSYSNIFQTTCTRCGKMQDqaAN----LPTLRRPKT 331
Q4W9T3       242 MVDWRVQELAAPGRPKTKLETAVAACLNa-RPRQWDLAYLLDMIASYSDVKQTPCVKCGKMTDnaAQ----LPSVRRPNP 316 Aspergillus fum...
Q2U0Q4       275 VPEWQVSSRTMPGQVKTKLESAVSDCLNs-RSRQWDLAYLLDMISSYSDVKQTPCVKCGRMTDnaAQ----LPAVRQQKQ 349 Aspergillus oryzae
XP_001274842 241 VSDWRVMDKAVPGKPKTKLELGIMACLNa-RPRQWDLAHLLDMISAYSAVKQTPCAKCGKMTNsaAQ----LPTIRQPKP 315
XP_049971547 230 IVEWNVSKQPLPGRAPTKIEDSIVQCVNa-RPRKWDLAFVIDMISSYSDMKQTVCVKCNKLTDssAQ----LPVIRRAQA 304
Q10477       173 FIFFHDTRGKFSVYCSSSKDDAITFSINrnNNFLGNLWSLMPKILDYQHLYSKPCDFCKSLI---SPvyleLPSVRRNAN 249 Schizosaccharom...
7LBM_n       301 -----------TLEAFH 306 human
6_pfamImport  72 vttsn-gdsktAWEPFH 87 
4_pfamImport  76 tpqe---qgsqTWEAYH 89 
GAD96507     316 vespd-gkkstTWEAYH 331
XP_050467907 332 kepqt--dqppTFEAYH 346
Q4W9T3       317 lqssq--gqpvLWEAYH 331 Aspergillus fumigatus
Q2U0Q4       350 qsdp---qqppIWEAYH 363 Aspergillus oryzae
XP_001274842 316 tsdgq--esslQWDAYH 330
XP_049971547 305 ipsaqqepqglVFDALH 321
Q10477       250 stvk---ptskDILALH 263 Schizosaccharomyces pombe 972h-
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap