6W1S


Conserved Protein Domain Family
Med29

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pfam11568: Med29 (This model is not part of the current CDD release)
Mediator complex subunit 29
Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species. It is arranged into four different sections, a core, a head, a tail and a kinase-active part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med29, along with Med11 and Med28, in mammals, is part of the core head-region of the complex. Med29 is the apparent orthologue of the Drosophila melanogaster Intersex protein, which interacts directly with, and functions as a transcriptional coactivator for, the DNA-binding transcription factor Doublesex, so it is likely that mammalian Med29 serves as a target for one or more DNA-binding transcriptional activators.
Statistics
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PSSM-Id: 519774
Aligned: 22 rows
Threshold Bit Score: 139.747
Created: 15-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
6W1S_X         1 DFDPVQRYKMLIPQL-KESLQTLMKVAAQNLIQNT-NIDNGQks----sDAPLQRFDKCLEEFYALCDQLELCLRLAHEC 74  house mouse
XP_009019382  38 DQMDPISKVRLMLPQ-LKESLNRLYSESSTMLNSN-FQDGFElvk--pvDPSASNRIEKSLEKFHSVCDAMEVNLKLSME 113
XP_783567     59 QEHDAIAKVKMTVVL-LKEALRNLMKISAQAFAHS-ATIDNTtk----tSDEIAARFDKSLEEFYSLCDQLELSLRLAYD 132
XP_026692553  77 QNKDPVHNAKAILPH-LKESLVNLMAVASQNFAVS-VSVDDMqk---vvDASNVPRFDKCLEHFYNLCDQLELQLNLGHH 151
2_pfamImport   1 QNKDPVQKAKALLPH-LKESLVNLMAVASQNFAVS-VAVDDMqk---svDTSSVPRFDKCLEHFFSLCDQLEVQLNLGHH 75 
EGT34724     315 MVQDPVDLVRNLVQKdLRNCLVEMNKRGAVLVKKR-FEGDSV-------LDEDKEQYKRSANDFDAVCDDVDRMLTTIME 386
Q8JHI6        33 QDFDPVHRFKMLIPP-LKDSLQNVMTIASLNFAHN-TAIDNGlkttekgNDAAVQRFDKSLEEFYALCDQLELCLRLAHE 110 zebrafish
Q60YF6       322 MVQDPVDLVRNLVQKdLRMSVVEMNKRGAELLHQK-EEGAIK--------EEDRQQYKRATNDFHAVCDEIDRTLTTIME 392 Caenorhabditis ...
XP_003111024 315 MVQDPVDLVRNLVQKdLRNSVVEMNKRGADLVRQR-EEKNVN--------ESDRAQFKRAANDFHAVCDEIDRTLTTVME 385
1_pfamImport   1 MVQDPVDLVRNLVQKdLRNSLVEMNRRGAVLVRQReEEGEIS--------QEDKQQYKRAANDFNAVCDEIDRTLTTVME 72 
6W1S_X        75 LSQSCDS--------AKHSPTLVPTATKPDAVQPDSL---PYPQYLAVIKAQITCAKDIHTALLDCANKVT 134 house mouse
XP_009019382 114 VLVHYTE--------SRRYVARNVADMTAG---STQAadaLTYQQYASVVKSQAEYAKEIKDLINACAKKV 173
XP_783567    133 CTTQFMD--------GARYTPVPLVHSHKPDMMPTEA---LTYGQYISTVKAQIQCASDVHTALLDCCQKL 192
XP_026692553 152 QLSQALA--------SIQHTPLMRNVNLKDDANGPQI-----YGNYINTVESQLQCAEEIQNLLLNCCKKL 209
2_pfamImport  76 QLSQALV--------STQNTPFMRNVVLKENPNGAQL-----YGSYVNTVESQLHCVKEIHDLLSNCCKKL 133
EGT34724     387 TAKQLSKlekvfnerTLRDQDGEVMVNQVQTFVDNTDivqKMFDDTINNVTATMEKVRRREKKWEDLQKEQ 457
Q8JHI6       111 CLSQSID--------STKHSPNLVPTATKPDTVQTES---LSYSQYLSMIKSQISCAKDIHNALLECSKKI 170 zebrafish
Q60YF6       393 TAKQITKldkvfqdrTSKEIDGEAMVNSVQKFVDETGivqKMFDDTVNSVTSTMEKMRRRQKKWKDQQQQQ 463 Caenorhabditis briggsae
XP_003111024 386 TAKQLIKlekvfmdrNSKELDGELMVNSVQSFVDNTDivqKMFDETIGGVTASMEKMRRRQKKWEDLQKET 456
1_pfamImport  73 TAKQLSKldkvfierSTKELDGEVMVNCVQKFVDNTEivqKMFDGTIGNVTATMEKIRRREKKWEDLQRKK 143
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