6W1S


Conserved Protein Domain Family
Med29

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pfam11568: Med29 (This model is not part of the current CDD release)
Mediator complex subunit 29
Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species. It is arranged into four different sections, a core, a head, a tail and a kinase-active part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med29, along with Med11 and Med28, in mammals, is part of the core head-region of the complex. Med29 is the apparent orthologue of the Drosophila melanogaster Intersex protein, which interacts directly with, and functions as a transcriptional coactivator for, the DNA-binding transcription factor Doublesex, so it is likely that mammalian Med29 serves as a target for one or more DNA-binding transcriptional activators.
Statistics
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PSSM-Id: 491949
Aligned: 22 rows
Threshold Bit Score: 158.243
Created: 21-Aug-2024
Updated: 4-Dec-2024
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
6W1S_X         1 DFDPVQRYKMLIPQ-LKESLQTLMKVAAQNLIQN-TNIDNGqk--sSDAPLQRFDKCLEEFYALCDQLELCLRLAHECLS 76  house mouse
XP_009019382  39 QMDPISKVRLMLPQ-LKESLNRLYSESSTMLNSN-FQDGFElvkpvDPSASNRIEKSLEKFHSVCDAMEVNLKLSMEVLV 116
XP_783567     60 EHDAIAKVKMTVVL-LKEALRNLMKISAQAFAHS-ATIDNTtk--tSDEIAARFDKSLEEFYSLCDQLELSLRLAYDCTT 135
XP_026692553  78 NKDPVHNAKAILPH-LKESLVNLMAVASQNFAVS-VSVDDMqk-vvDASNVPRFDKCLEHFYNLCDQLELQLNLGHHQLS 154
2_pfamImport   2 NKDPVQKAKALLPH-LKESLVNLMAVASQNFAVS-VAVDDMqk-svDTSSVPRFDKCLEHFFSLCDQLEVQLNLGHHQLS 78 
EGT34724     316 VQDPVDLVRNLVQKdLRNCLVEMNKRGAVLVKKR-FEGDSV-----LDEDKEQYKRSANDFDAVCDDVDRMLTTIMETAK 389
Q60YF6       323 VQDPVDLVRNLVQKdLRMSVVEMNKRGAELLHQK-EEGAIK------EEDRQQYKRATNDFHAVCDEIDRTLTTIMETAK 395 Caenorhabditis ...
XP_003111024 344 VQDPVDLVRNLVQKdLRNSVVEMNKRGADLVRQR-EEKNVN------ESDRAQFKRAANDFHAVCDEIDRTLTTVMETAK 416
1_pfamImport   2 VQDPVDLVRNLVQKdLRNSLVEMNRRGAVLVRQReEEGEIS------QEDKQQYKRAANDFNAVCDEIDRTLTTVMETAK 75 
4_pfamImport   1 KYDNIARVKTLVWS-LKQSVQGLIKISAAYISHN-AAVDSGlk-apDDKVLPAFDKAFEDFHSLLNQIELHFKTIQECAI 77 
6W1S_X        77 QSCD--------SAKHSPTL----VPTATKPDAVQPDS---LPYPQYLAVIKAQITCAKDIHTALLDCANKVT 134 house mouse
XP_009019382 117 HYTE--------SRRYVARN----VADMTAG---STQAadaLTYQQYASVVKSQAEYAKEIKDLINACAKKVN 174
XP_783567    136 QFMD--------GARYTPVP----LVHSHKPDMMPTEA---LTYGQYISTVKAQIQCASDVHTALLDCCQKLG 193
XP_026692553 155 QALA--------SIQHTPLM----RNVNLKDDANGPQI-----YGNYINTVESQLQCAEEIQNLLLNCCKKLQ 210
2_pfamImport  79 QALV--------STQNTPFM----RNVVLKENPNGAQL-----YGSYVNTVESQLHCVKEIHDLLSNCCKKLQ 134
EGT34724     390 QLSKlekvfnerTLRDQDGE----VMVNQVQTFVDNTDivqKMFDDTINNVTATMEKVRRREKKWEDLQKEQQ 458
Q60YF6       396 QITKldkvfqdrTSKEIDGE----AMVNSVQKFVDETGivqKMFDDTVNSVTSTMEKMRRRQKKWKDQQQQQE 464 Caenorhabditis briggsae
XP_003111024 417 QLIKlekvfmdrNSKELDGE----LMVNSVQSFVDNTDivqKMFDETIGGVTASMEKMRRRQKKWEDLQKETQ 485
1_pfamImport  76 QLSKldkvfierSTKELDGE----VMVNCVQKFVDNTEivqKMFDGTIGNVTATMEKIRRREKKWEDLQRKKK 144
4_pfamImport  78 QQRQ--------SQKYLPGPdkykAGPPKTEPYMDSGSdheLPYNQYIHLIRGQLSFVESLQKILLDGSRKIE 142
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